Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04698 ATGGACACCAAAATGGAGGAACCTCACGTTGACGGCTCTCCACCAGAAATCGGATATGGCCATTACGGGTGCTCACACTATAAAAGGAGATGCAAGATCATAGCGCCCTGTTGCAGTGAAATTTTCGATTGCAGACATTGTCACAATGAATCTAAGAATACGATTTATGTCGATCCTGTTAACCGCCATGATGTTCCTCGCCATGATGTGAAGAGGGTTGTCTGTTCCTTGTGTAACACAGAACAAGACGTTCAACAGATGTGCATTCACTGTGGTGTTTGTATGGGGAGATATTTCTGCTCCAAATGCAAGTTCTTCGATGATGATGTATCAAAAAATCAATACCATTGTGATGAATGTGGCATCTGCAGAACAGGAGGTGAAGAGAACTTTTTCCACTGTAACAAATGTGGATGCTGTTATTCATCATTGTTGAAGGATTCACACCACTGTATTGAAAAGGCAATGCATCACAATTGCCCTGTTTGCTTTGAGTTTCTTTTTGATACAACAAAAGACATTACTGTATTGCCATGTGGTCACACCATACATTTGGGATGTGTGAGAGAAATGGAACAGCATTTCCAGTTAGTTACAAAACTAAAGGGTCTTCAGTGA 618 0.411 MDTKMEEPHVDGSPPEIGYGHYGCSHYKRRCKIIAPCCSEIFDCRHCHNESKNTIYVDPVNRHDVPRHDVKRVVCSLCNTEQDVQQMCIHCGVCMGRYFCSKCKFFDDDVSKNQYHCDECGICRTGGEENFFHCNKCGCCYSSLLKDSHHCIEKAMHHNCPVCFEFLFDTTKDITVLPCGHTIHLGCVREMEQHFQLVTKLKGLQ. 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04698 205 Pfam RING-type zinc-finger 160 190 IPR027370 -
Seca2g04698 205 Pfam CHY zinc finger 24 105 IPR008913 GO:0008270
Seca2g04698 205 SUPERFAMILY CHY zinc finger-like 20 95 IPR037274 GO:0008270
Seca2g04698 205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 197 IPR013083 -
Seca2g04698 205 SUPERFAMILY Zinc hairpin stack 96 153 IPR037275 -
Seca2g04698 205 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 20 192 - -
Seca2g04698 205 ProSiteProfiles Zinc finger CHY-type profile. 17 93 IPR008913 GO:0008270
Seca2g04698 205 SUPERFAMILY RING/U-box 158 193 - -
Seca2g04698 205 ProSiteProfiles Zinc finger CTCHY-type profile. 95 159 IPR017921 -
Seca2g04698 205 ProSiteProfiles Zinc finger RING-type profile. 160 190 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04698 Seca-Chr2 133137104 133140553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04698 22 189 C2H2 Transcription Factor Family AT3G18290 40.462 5.55e-34 125