Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04696 ATGCTCCAAACAACCTGCATTTTGCTAATCTTTCTTCTGAGTTCATTTTCACCACTTGGAACAGCAATGCTGAACCTAACTCTTCCCGGAGCACACCCTGACCCTGACGCTGTTGCCCATGAAGTTCATAGTGAAAAGGTTAGATCTGGACATCAGGGTCATGTTCTGTTCCTCATTCACTTTCCCTTTTCATCTTTGAGATTACTAGTTATGCTGTGTGTTGTGAGCTGTAACTTAGCTTCAGATTCACCAACTCTGTTCTGTAGGAAGGTTAATGCTTCAATTGCAAGAAGGGAAATGCTAGCAATGTCACAGAAAGATGAGTCTTCTTCATGTTTCACAGGGAACCCAATTGATGATTGTTGGAAATGTGACCCAGATTGGCCTAACAACCGTCAGAGGTTAGCTGATTGTGCCATTGGGTTTGGTCAGTATGCAAAGGGAGGAAAAGGTGGTGAATTTTATGTTGTTACTGATTCTTCAGATAATGATGCTGTGAATCCCAAACCTGGAACTCTGAGATATGCAGTGATACAAAATGAGCCACTGTGGATAGTGTTTCCAAGTAACATGATGATTAAGCTGTCTCAGGAGCTGATCTTTAACAGCTACAAGACCATTGATGGGCGTGGAGCAGATGTACACATTGTGGGAGGAGGGTGCATCACTCTGCAGTATATAAGCAATGTCATTATACACAATATTCATATCCACCATTGTCATCCCTCAGGTAACACAAACGTGCGGTCAAGTCCAGAGCACTACGGGTACAGAACAGAATCAGACGGTGATGGAATATCCATATTCGGATCCAAAGACATATGGATCGACCATTGCACCCTATCACGTTGCAAGGACGGTTTAATAGACGCTGTGATGGGTTCAACCGCTATAACCATATCCAACAACTTCATGTCACACCACAATGAGGTGATGCTATTGGGACACAGCGACGATTACCTTCCAGACTCAGGCATGCAGGTAACCATCGCTTTCAACCACTTTGGTGAGAAGCTCGTTCAGAGGATGCCACGTTGCAGAAGAGGTTACATTCACGTTGTCAACAACGACTTCACTCAGTGGGAGATGTATGCTATTGGAGGGAGTGGGGAACCCACTATTAACAGCCAGGGGAACCGTTATACTGCACCTACTAACCCTTTTGCTAAGGAAGTGACAAAGAGGGTGGAGACTCAACAGTCCAAGTGGAAGGGATGGAATTGGAGGTCAGAGGGGGACATTATGGTGAATGGAGCATTTTTTGTAACGTCAGGGGAAGGTCTTGAGGTTAAGTATGAGAAGGCTTATAGTATTGAACCTAAGTCTGCTGATCGCATTTCTCTCCTCACCATGTCTGCCGGAGTTCTAGGCAACGCCAGGGACAACAATCTGGGAATGTGGAGCAGAGGACCTAACGGTGATGGTGATGGTTATGACACATATGAGTCTGGGCCAGAGTACACGGATGATATGTCGAGGAGTGCGAGAGTGGTGCTGCCACCTTCACCTGCTTTAACTCTTGTGTTGCTGTGCTTCTTGTCTTGTAGAATAATACCGTTAACGTTCATTCTATGA 1575 0.4521 MLQTTCILLIFLLSSFSPLGTAMLNLTLPGAHPDPDAVAHEVHSEKVRSGHQGHVLFLIHFPFSSLRLLVMLCVVSCNLASDSPTLFCRKVNASIARREMLAMSQKDESSSCFTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEFYVVTDSSDNDAVNPKPGTLRYAVIQNEPLWIVFPSNMMIKLSQELIFNSYKTIDGRGADVHIVGGGCITLQYISNVIIHNIHIHHCHPSGNTNVRSSPEHYGYRTESDGDGISIFGSKDIWIDHCTLSRCKDGLIDAVMGSTAITISNNFMSHHNEVMLLGHSDDYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGEPTINSQGNRYTAPTNPFAKEVTKRVETQQSKWKGWNWRSEGDIMVNGAFFVTSGEGLEVKYEKAYSIEPKSADRISLLTMSAGVLGNARDNNLGMWSRGPNGDGDGYDTYESGPEYTDDMSRSARVVLPPSPALTLVLLCFLSCRIIPLTFIL. 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04696 524 PRINTS Pollen allergen Amb family signature 162 187 IPR018082 -
Seca2g04696 524 PRINTS Pollen allergen Amb family signature 435 458 IPR018082 -
Seca2g04696 524 PRINTS Pollen allergen Amb family signature 262 283 IPR018082 -
Seca2g04696 524 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Seca2g04696 524 PRINTS Pollen allergen Amb family signature 406 430 IPR018082 -
Seca2g04696 524 PRINTS Pollen allergen Amb family signature 198 214 IPR018082 -
Seca2g04696 524 PRINTS Pollen allergen Amb family signature 138 155 IPR018082 -
Seca2g04696 524 PRINTS Pollen allergen Amb family signature 364 383 IPR018082 -
Seca2g04696 524 Gene3D - 115 457 IPR012334 -
Seca2g04696 524 SUPERFAMILY Pectin lyase-like 111 442 IPR011050 -
Seca2g04696 524 PANTHER PECTATE LYASE 18-RELATED 97 458 IPR045032 GO:0030570
Seca2g04696 524 SMART amb_all 190 387 IPR002022 -
Seca2g04696 524 FunFam Pectate lyase 115 457 - -
Seca2g04696 524 Pfam Pectate lyase 199 375 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04696 Seca-Chr2 133112381 133116731 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04696 1 517 Polysaccharide Lyase AT3G53190 67.692 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04696 K01728 - gmx:100775595 814.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04696 2 133112381 133116731 Seca2g04696 2 133112381 133116731 ECH
Seca8g05302 8 143623839 143628984 Seca2g04696 2 133112381 133116731 PCT