Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04681 ATGGCGAGTCCGTTCAATGGTCACGACTTCGACGAGAACCTGTATGCAGCAGTAGAAGAATTCATTGGTGACGCAGCAGGATATGGAGTCACCGAAGACGAAGAAGACGACGAAGACGAAGACGAAGATGAAGAAGAAGACGAAGAAGAGGAAGAAGATAATGATGACGATGAAGATTACGTCGCCGCTTTACCATCACTTAGGGTTTCTCAGGAAGGTCCCCATAATCTAACCTCTAATGAAGTAATTGTTATCCCCGACGTAGAACCACAGAATTGCGTTGAAGAGGAGGGAAACAAACGCCGTAGAACCGAAGGGGGTCAGGCTTCGTGCTCATGCGTCGCAATTGGGAGCGCCGAAGGCAGTCAAGGGAACGAGTGCAACACTGACAACCTTATTTGCCCTATTTGTATGGACGTTTGGACCAATAACGGCGAACATAACATCTGTTGTCTTCCTTGTGGACACGTATATGGCATGTCTTGCATCAAGAGATGGCTTCAACAGCGGAAAAATTCGGGGAAGTGTCCTCAATGTAATAGGAAATGCTCGTTGAAGGATGTGAGAAAACTCTATGCTTCTAGAGTAGTTGCTGTCGATGAAGAATCTCAGAAGAGAGTTAAGTCACTCGAGGTCAAATGTGCTGACCTTGAAAGTAAGGATGGTGATTGGCGCAAGAAAGAAGCTGAATGGCAGAAGAGAGAAGCTGCATTGCGTCTTAAAGTTCAGAACCTTACACAGAGAAACACTTATTTGGAGCAGCTGCAACTAGATATGCAGAGCAGACAATCTGGATTTACAAATGGCAATGTGAGCTCTCAATGGAGATTTGAATCTGAACGCAACTGTGGCTCAAAGTTCCATGGAAAAGGATCTTTTTGCAATTTTGAATTTCAGAGAGCGTTTCATCTAGATGGTGCACGTGCATTTGATATGGAGCCTTCTAATAATATTTTATTAGTTGCACAAAGGCCAAAAGGGATAGGTGGAGCACCCTTGCTAACTAAAATGAGCTTGATATGTCCATTTGAGATGGAAGATATCTTACTGCCTTCCACTACGTATGGTATTAGAGACCTACATATTTCTCCTTCCGGTAGTCTGGCTCTCTATGCTTCATTAGGGAAGAAATTATCAGTGCTCAACTTGGACAATAACAACCTCGTTGTCAATTATGATCTACAGAATTCTATTCCAGGCTCCTGCTTGGTCGTGTTCATGGGATCTCAACAGTACACATTACATATATGCCGGACTACAGGTCAGCACATTGCTTTTTTATATTTAATGGGTGTAGGAAATTCAAATGCTAATCTTCATATAACTTTCCTGCAGGATGGTTCTGTCTTGGTGTTTGATATGCGCCAAATTGCAGGACCCGTGAAAACTTTAGTTGGGTTGACTAACAACCCTGTCCATACTGTACAATCTCTTGCACAAACTTCAAGTCTTTCTTCTGGTGGTAGAACCATCCTATCTGCATCTGCAATTGGCCTTTGTCAGTGGAGCATTGATTCTCAAGAACGGCCATTTGTGGTTCCTGAAAGTGATAATCAAGGAGTTTGTATATCCGTTGCTTATTGCCCTAGCAGTGATGACATTGTTGTTTCATACCGGCCGAAGTTTGATAGTTCGACGGATATGCCTCTTACTCTATCGCCCAGTCCTAATGGTATTGGACAAGGAGTACAGGGCTCTCATGTCTTGTTCAAGAGAATGGGCAATCACCATTTCCAAAAGGTGGGTTCCTCGTATGCCAATGTAAGTAAAATTCGGCTACCAAAGTCTATAATTATAGACATGGAGAATCAGAGTAGATTGTTTGTATCTGGAGATGAAATGACATCTGATTTGGTCTTGCACGAGTTGCCATCGTTTAGAGTTATTCAGCAATTCAAAATGCCAGCTCAGGCCCGTGATATTAGGTATTCACCTAGCCATGGAATACTTGGTTGTTTAAGTGAAAACACGCTGCAACTCTTCGATGCCAATCTCTCGTGA 2001 0.4308 MASPFNGHDFDENLYAAVEEFIGDAAGYGVTEDEEDDEDEDEDEEEDEEEEEDNDDDEDYVAALPSLRVSQEGPHNLTSNEVIVIPDVEPQNCVEEEGNKRRRTEGGQASCSCVAIGSAEGSQGNECNTDNLICPICMDVWTNNGEHNICCLPCGHVYGMSCIKRWLQQRKNSGKCPQCNRKCSLKDVRKLYASRVVAVDEESQKRVKSLEVKCADLESKDGDWRKKEAEWQKREAALRLKVQNLTQRNTYLEQLQLDMQSRQSGFTNGNVSSQWRFESERNCGSKFHGKGSFCNFEFQRAFHLDGARAFDMEPSNNILLVAQRPKGIGGAPLLTKMSLICPFEMEDILLPSTTYGIRDLHISPSGSLALYASLGKKLSVLNLDNNNLVVNYDLQNSIPGSCLVVFMGSQQYTLHICRTTGQHIAFLYLMGVGNSNANLHITFLQDGSVLVFDMRQIAGPVKTLVGLTNNPVHTVQSLAQTSSLSSGGRTILSASAIGLCQWSIDSQERPFVVPESDNQGVCISVAYCPSSDDIVVSYRPKFDSSTDMPLTLSPSPNGIGQGVQGSHVLFKRMGNHHFQKVGSSYANVSKIRLPKSIIIDMENQSRLFVSGDEMTSDLVLHELPSFRVIQQFKMPAQARDIRYSPSHGILGCLSENTLQLFDANLS. 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04681 666 SMART ring_2 134 179 IPR001841 -
Seca2g04681 666 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 246 IPR013083 -
Seca2g04681 666 SUPERFAMILY WD40 repeat-like 299 657 IPR036322 GO:0005515
Seca2g04681 666 SUPERFAMILY RING/U-box 128 186 - -
Seca2g04681 666 PANTHER RFWD3 PROTEIN 33 664 IPR037381 GO:0004842|GO:0005634|GO:0016567|GO:0036297
Seca2g04681 666 MobiDBLite consensus disorder prediction 21 59 - -
Seca2g04681 666 Coils Coil 200 220 - -
Seca2g04681 666 MobiDBLite consensus disorder prediction 29 59 - -
Seca2g04681 666 Coils Coil 31 51 - -
Seca2g04681 666 Pfam Ring finger domain 134 180 IPR001841 -
Seca2g04681 666 ProSiteProfiles Zinc finger RING-type profile. 134 180 IPR001841 -
Seca2g04681 666 Gene3D - 301 570 IPR015943 GO:0005515
Seca2g04681 666 CDD mRING-C3HGC3_RFWD3 130 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04681 Seca-Chr2 132978794 132984065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04681 131 219 C3H Transcription Factor Family AT4G01270 32.075 4.61e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04681 K15691 - gmx:100818898 679.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04681 2 132978794 132984065 Seca2g04681 2 132978794 132984065 ECH