Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04675 ATGGGTAGAGCTCCTTGCTGTGACAAGGCAAATGTAAAGAAAGGACCATGGTCACCTGAAGAAGATGCAAAACTAAAGGAGTACATAGAGAAACATGGAACTGGTGGAAACTGGATTGCTCTCCCAAAGAAAGTTGGATTGTGTTTGTTTTCAGGTTTGAAAAGATGTGGCAAGAGCTGTAGACTAAGATGGCTTAATTATCTCAGACCCAACATTAAACATGGAGAGTTCTCTGATGCAGAAGATAAAATAATCTGCACCCTCTTTGCAAGCATTGGAAGCAGGTGGTCAATAATAGCATCTCAATTGCCAGGCAGGACTGACAATGATATAAAGAACTATTGGAACACCAAGCTTAAGAAAAAAATGATGTCCATGAATCATTCAGCAGAAAGGAAACCTCAACAAGCTACCCTTTTATCAATGCTTCAAAATTCAACATCATCTTCATCATTGTCATTCAGAGAAAGCAACAACTCATACTACCACCCTCATGGATCTTTCACAGGATCATTTTCCTACTCATCAACAACATCAAGTCTTTTGAGTGGAACTTCTTCCACTTCTGCTTCTTCTAACTCCATATTTCAAGCACAAGAAAGTTTCATTGATCCCACTCAATTTAAAGCTAGCAATAGCAGCTTTGTGTTTGGTGGTGAAGCTACTAGTTGCAGCTCTTCTGATGGTAGCAGCAACAACCAGATCAGTCATGTTATAGAACCAGAGTTTGGATATGGTGATGCAACTTTTGTAGAGCAAATAGGTTCAGTTAATTACTTCTATAGTGGGGTGGAAGATAGCCAGAAGTTGATGTTCTCCAATGCTGGTAGTGTTAGTGGGTGGACAGAGAAACAAAGTGTTCTGTGGGGAGAAAATCCATTGGATTATGGTATAGAAGAAATAAAACAGCTAATAAGCACTAATAGTTGCAATAACTTTTTGTTTGATGACAAGAAGACAGAGGAAAGTGTCATGTACTACTGA 984 0.3902 MGRAPCCDKANVKKGPWSPEEDAKLKEYIEKHGTGGNWIALPKKVGLCLFSGLKRCGKSCRLRWLNYLRPNIKHGEFSDAEDKIICTLFASIGSRWSIIASQLPGRTDNDIKNYWNTKLKKKMMSMNHSAERKPQQATLLSMLQNSTSSSSLSFRESNNSYYHPHGSFTGSFSYSSTTSSLLSGTSSTSASSNSIFQAQESFIDPTQFKASNSSFVFGGEATSCSSSDGSSNNQISHVIEPEFGYGDATFVEQIGSVNYFYSGVEDSQKLMFSNAGSVSGWTEKQSVLWGENPLDYGIEEIKQLISTNSCNNFLFDDKKTEESVMYY. 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04675 327 Gene3D - 7 74 - -
Seca2g04675 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 68 IPR017930 -
Seca2g04675 327 CDD SANT 76 119 IPR001005 -
Seca2g04675 327 FunFam Transcription factor RAX3 7 74 - -
Seca2g04675 327 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Seca2g04675 327 Pfam Myb-like DNA-binding domain 14 68 IPR001005 -
Seca2g04675 327 Pfam Myb-like DNA-binding domain 75 117 IPR001005 -
Seca2g04675 327 PANTHER OS09G0431300 PROTEIN 1 304 - -
Seca2g04675 327 SMART sant 73 121 IPR001005 -
Seca2g04675 327 SMART sant 13 70 IPR001005 -
Seca2g04675 327 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Seca2g04675 327 ProSiteProfiles Myb-like domain profile. 9 68 IPR001005 -
Seca2g04675 327 SUPERFAMILY Homeodomain-like 11 115 IPR009057 -
Seca2g04675 327 CDD SANT 16 68 IPR001005 -
Seca2g04675 327 Gene3D - 75 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04675 Seca-Chr2 132911078 132912405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04675 1 245 MYB Transcription Factor Family AT5G57620 49.042 9.67e-75 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca2g04675 Myb_DNA-binding 8.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04675 K09422 - gmx:778084 437.573