Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04670 ATGTCACAAGATTCTGAGGAGATAAAGACGATTGAGCAGTGGAAATGGTCCGAAATGCAAGGTCTTGAGCTCGTGAGTGATGCCACTCCCACTTCTCAGTCTCACAAATATAAAGCTACTAATAACCCACCAACGCTAACACCAGAGGAGGGTGGTGCTGCTACTGCTCCAAGGGAAATGGAGACTTCTGAACCTAACAAAGATGGTGCTACTAGTGGTAGTGGTAGTGGGGAGAAGCCTGAGAGTGTTCCCTCTGTGGGGTTTGGAGAGCTTTTCAGATTTGCTGATGGGTTAGATTATATTCTCATGTCAATTGGAACGGTTGGAGCAATAGTACACGGTTGTTCTTTGCCACTCTTTCTTCGGTTCTTTGCGGATCTTGTAAACTCTTTTGGGTCTAATGCTAATAACGTGGACAAGATGAGCCAGGAAGTAGTGAAGTATGCATTTTACTTCCTGGTGGTGGGTGCTGCTATATGGGCATCTTCATGGGCAGGTGAGTTTCCAATTAAATTCTGGTTCTTTTTGCTTTTTGGGTTTTTGATGTTTTTGTTTTCCATTGCAGAGATTTCTTGTTGGATGTGGACTGGAGAGCGTCAATCAACCAAGATGAGGATCAAGTATTTGGAAGCTGCGTTGAGTCAGGACATTGAGTTCTTTGATACTGAGGTTCGAACATCTGATGTTGTTTTTGCCATCAACACTGATGCTGTGATGGTCCAGGATGCCATTAGTGAGAAGTTGGGGAATTTCATTCATTACATGGCTACTTTTGTTTCTGGTTTTGTTGTGGGTTTCACTGCTGTTTGGCAATTGGCTCTGGTCACACTTGCTGTAGTTCCTATGATAGCTGTGATTGGAGCCATTCACACTACCACGTTGGCTAAGCTCTCTAGTAAGAGCCAGGAAGCTCTTTCTCAAGCTGGCAACATTGTGGAACAGACGGTTGTGCAAATCAGAGTAGTGTTTGCCTTTGTTGGGGAGTCACGAGCATTGCAAGCCTATTCATCAGCCTTGAAGGTTGCTCAGAAGATTGGCTACAAAACTGGGTTTGCAAAGGGAATGGGATTGGGAGCCACTTACTTTGTTGTTTTCTGTTGTTATGCACTTCTGCTGTGGTATGGAGGCTATCTTGTTAGGCATCATTACACCAATGGAGGACTTGCCATTGCAACTATGTTTGCTGTTATGATTGGTGGATTGGGTTTGGGGCAATCTGCACCCAGCATGGCTGCATTTACAAAGGCCAGGGTTGCTGCTGCAAAGATTTTCCGTATAATTGATCACAAGCCTGGGATAGACCGAAACAGTGAATCTGGCTTGGAATTGGAGACAGTCACAGGACTTGTGGAGCTGAAAAATGTAGACTTTTCATACCCATCAAGGCCAGAGGTTCAGATTCTTAACAATTTCTCCTTGAATGTGCCTGCTGGAAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGCAAGAGCACTGTTGTCTCCCTCATTGAGAGATTCTATGATCCAACTTCAGGACAAGTTCTGCTAGATGGTCATGACATTAAAACATTGAAGCTTAGATGGCTGAGGCAGCAGATAGGACTGGTGAGCCAAGAACCTGCTTTATTTGCTACCACAATTCGAGAAAATATACTGTTGGGCAGGCCTGATGCAAACCAGGTTGAGATTGAAGAAGCTGCCAGGGTTGCTAATGCCCATTCCTTCATCATCAAACTTCCAGAAGGCTATGATACCCTGGTAGGAGAAAGAGGGCTGCAACTTTCTGGAGGGCAAAAACAAAGAATAGCAATAGCAAGGGCAATGCTGAAAAACCCAGCAATTCTTCTCCTAGATGAGGCAACAAGTGCATTAGACTCAGAATCAGAAAAACTGGTGCAAGAAGCCCTTGACCGGTTCATGATTGGCAGAACAACTCTTGTGATTGCCCATCGCCTCTCTACAATTCGCAAAGCTGATCTTGTAGCTGTACTTCAGCAAGGAAGTGTTTCTGAAATTGGAACTCATGATGAGCTCTTTTCTAAAGGAGAAAATGGAGTCTATGCCAAGCTTATAAAGATGCAAGAGATGGCACATGAAACTGCTATGAATAATGCTAGAAAGAGCAGTGCAAGGCCTTCAAGTGCCAGAAACTCAGTAAGCTCACCCATAATTGCTAGAAATTCTTCTTATGGCCGGTCACCATACTCACGTAGGCTGTCTGATTTCTCTACATCTGATTTTAGTCTGTCCCTTGATGCATCACATCCAAATTACAGACTTGAAAAGCTTGCCTTCAAAGAGCAAGCCAGTTCCTTCTGGAGACTTGCAAAAATGAACTCTCCTGAATGGCTTTATGCTTTAATTGGATCTATAGGCTCTATTGTTTGTGGATCCCTTAGTGCATTCTTTGCTTATGTTCTCAGTGCTGTCCTCAGTGTCTATTACAATCCAGACCACAGATACATGATCCGACAAATAGATAAGTACTGCTACTTGTTGATTGGACTTTCATCAACAGCACTTCTTTTCAATACCTTGCAACACTTCTTCTGGGATATAGTTGGGGAAAATCTTACAAAACGTGTGAGGGAGAAAATGCTGACAGCAGTGCTCAAAAATGAAATGGCATGGTTTGATCAGGAGGAAAATGAGAGTGCCAGGATTGCTGCAAGGCTGGCTCTTGATGCCAACAATGTCAGATCAGCCATTGGAGATAGAATTTCAGTAATTGTGCAGAACACTGCACTTATGCTAGTTGCTTGTACTGCAGGCTTTGTGTTACAGTGGCGCCTTGCCCTTGTCCTCATAGCTGTTTTCCCTGTTGTTGTTGCAGCCACTGTTTTGCAGAAAATGTTCATGACTGGTTTCTCTGGTGACATGGAAGCTGCTCATGCCAAGGCCACACAACTAGCAGGAGAGGCTATAGCCAATGTAAGGACTGTTGCAGCTTTCAATTCAGAAACAAAAATTGTTGGCCTTTTCAGCTCCAATCTTGAAACTCCACTACAAAGATGCTTTTGGAAAGGACAGATTTCAGGAAGTGGATATGGGATAGCTCAGTTTGCACTTTATGCTTCCTATGCACTTGGTCTTTGGTATGCTTCTTGGCTAGTGAAGCATGGAATCTCTGACTTCTCTAAAACAATCAGAGTTTTTATGGTCCTCATGGTATCTGCCAATGGTGCTGCTGAAACTTTAACACTTGCTCCTGACTTCATCAAAGGAGGTAGAGCCATGAAGTCAGTCTTTGATCTCCTTGACCGCAGAACTGAAATTGAACCAGATGATCAAGATGCTACTCCTGTTCCAGATCGTCTTAGAGGTGAAGTTGAACTTAAGCATGTGGATTTCTCTTATCCTACTCGCCCAGATATGCCAGTTTTTCGTGACCTTAATCTTCGTGCAAGAGCTGGTAAAACTCTTGCACTTGTAGGACCTAGTGGCTGTGGTAAGAGCTCAGTGATTGCACTTATACAAAGATTCTATGATCCAACATCTGGTAGAGTCATGATTGATGGGAAGGACATAAGGAAATACAACCTTAAGTCCTTAAGAAGGCACATTTCTGTGGTACCTCAAGAGCCATGCTTGTTTGCTACTACTATTTATGAAAACATTGCTTATGGACATGAATCAGCTACTGAAGCTGAGATAATTGAAGCTGCAACTCTTGCCAATGCTCATAAGTTCATATCTGCTTTGCCTGATGGATACAAAACATTTGTTGGGGAGAGAGGTGTTCAACTCTCTGGGGGACAAAAGCAGAGAATAGCAGTTGCTAGAGCTTTTGTGAGGAAAGCTGAGCTTATGCTTCTTGATGAGGCAACAAGTGCACTTGATGCTGAATCTGAGAGGTCTGTTCAGGAAGCTCTAGACCGTGCCTCCTCAGGAAAAACAACTATCATTGTTGCTCATAGGCTATCAACTATCAGAAATGCCAATGTGATTGCTGTGGTTGATGATGGGAAAGTAGCTGAACAAGGTTCCCATTCACAGTTGTTGAAAAATCACCCAGATGGGATTTATGCACGCATGATTCAATTACAAAGGTTCACACATAGTCAAGTAATTGGAATGGCCTCTGGTTCAAGTTCTTCAACAAGACCAAAAGATGATGAAAGAGAAGGCTAG 4116 0.4349 MSQDSEEIKTIEQWKWSEMQGLELVSDATPTSQSHKYKATNNPPTLTPEEGGAATAPREMETSEPNKDGATSGSGSGEKPESVPSVGFGELFRFADGLDYILMSIGTVGAIVHGCSLPLFLRFFADLVNSFGSNANNVDKMSQEVVKYAFYFLVVGAAIWASSWAGEFPIKFWFFLLFGFLMFLFSIAEISCWMWTGERQSTKMRIKYLEAALSQDIEFFDTEVRTSDVVFAINTDAVMVQDAISEKLGNFIHYMATFVSGFVVGFTAVWQLALVTLAVVPMIAVIGAIHTTTLAKLSSKSQEALSQAGNIVEQTVVQIRVVFAFVGESRALQAYSSALKVAQKIGYKTGFAKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTNGGLAIATMFAVMIGGLGLGQSAPSMAAFTKARVAAAKIFRIIDHKPGIDRNSESGLELETVTGLVELKNVDFSYPSRPEVQILNNFSLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPTSGQVLLDGHDIKTLKLRWLRQQIGLVSQEPALFATTIRENILLGRPDANQVEIEEAARVANAHSFIIKLPEGYDTLVGERGLQLSGGQKQRIAIARAMLKNPAILLLDEATSALDSESEKLVQEALDRFMIGRTTLVIAHRLSTIRKADLVAVLQQGSVSEIGTHDELFSKGENGVYAKLIKMQEMAHETAMNNARKSSARPSSARNSVSSPIIARNSSYGRSPYSRRLSDFSTSDFSLSLDASHPNYRLEKLAFKEQASSFWRLAKMNSPEWLYALIGSIGSIVCGSLSAFFAYVLSAVLSVYYNPDHRYMIRQIDKYCYLLIGLSSTALLFNTLQHFFWDIVGENLTKRVREKMLTAVLKNEMAWFDQEENESARIAARLALDANNVRSAIGDRISVIVQNTALMLVACTAGFVLQWRLALVLIAVFPVVVAATVLQKMFMTGFSGDMEAAHAKATQLAGEAIANVRTVAAFNSETKIVGLFSSNLETPLQRCFWKGQISGSGYGIAQFALYASYALGLWYASWLVKHGISDFSKTIRVFMVLMVSANGAAETLTLAPDFIKGGRAMKSVFDLLDRRTEIEPDDQDATPVPDRLRGEVELKHVDFSYPTRPDMPVFRDLNLRARAGKTLALVGPSGCGKSSVIALIQRFYDPTSGRVMIDGKDIRKYNLKSLRRHISVVPQEPCLFATTIYENIAYGHESATEAEIIEAATLANAHKFISALPDGYKTFVGERGVQLSGGQKQRIAVARAFVRKAELMLLDEATSALDAESERSVQEALDRASSGKTTIIVAHRLSTIRNANVIAVVDDGKVAEQGSHSQLLKNHPDGIYARMIQLQRFTHSQVIGMASGSSSSTRPKDDEREG. 1372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04670 1371 MobiDBLite consensus disorder prediction 25 83 - -
Seca2g04670 1371 FunFam ABC transporter B family member 1 90 448 - -
Seca2g04670 1371 Pfam ABC transporter transmembrane region 104 399 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g04670 1371 Pfam ABC transporter transmembrane region 783 1052 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g04670 1371 MobiDBLite consensus disorder prediction 25 48 - -
Seca2g04670 1371 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 105 415 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g04670 1371 PANTHER ABC TRANSPORTER B FAMILY 63 834 IPR039421 -
Seca2g04670 1371 FunFam ABC transporter B family member 19 1071 1093 - -
Seca2g04670 1371 CDD ABC_6TM_Pgp_ABCB1_D2_like 771 1087 - -
Seca2g04670 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1096 1344 IPR027417 -
Seca2g04670 1371 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 441 689 IPR027417 -
Seca2g04670 1371 Gene3D ABC transporter type 1, transmembrane domain 90 702 IPR036640 GO:0005524|GO:0016020
Seca2g04670 1371 FunFam ABC transporter B family member 1 761 1070 - -
Seca2g04670 1371 CDD ABC_6TM_Pgp_ABCB1_D1_like 103 423 - -
Seca2g04670 1371 SUPERFAMILY ABC transporter transmembrane region 769 1089 IPR036640 GO:0005524|GO:0016020
Seca2g04670 1371 Gene3D - 440 690 IPR027417 -
Seca2g04670 1371 Gene3D - 1094 1345 IPR027417 -
Seca2g04670 1371 FunFam ABC transporter B family member 1 440 690 - -
Seca2g04670 1371 MobiDBLite consensus disorder prediction 1352 1371 - -
Seca2g04670 1371 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1105 1341 IPR003439 GO:0005524
Seca2g04670 1371 Pfam ABC transporter 468 617 IPR003439 GO:0005524
Seca2g04670 1371 ProSitePatterns ABC transporters family signature. 1244 1258 IPR017871 GO:0005524|GO:0016887
Seca2g04670 1371 CDD ABC_MTABC3_MDL1_MDL2 1105 1344 - -
Seca2g04670 1371 SMART AAA_5 1132 1324 IPR003593 GO:0016887
Seca2g04670 1371 SMART AAA_5 477 663 IPR003593 GO:0016887
Seca2g04670 1371 FunFam ABC transporter B family member 1 1095 1345 - -
Seca2g04670 1371 Pfam ABC transporter 1124 1272 IPR003439 GO:0005524
Seca2g04670 1371 Gene3D ABC transporter type 1, transmembrane domain 761 1070 IPR036640 GO:0005524|GO:0016020
Seca2g04670 1371 CDD ABC_MTABC3_MDL1_MDL2 450 689 - -
Seca2g04670 1371 Gene3D ABC transporter type 1, transmembrane domain 1071 1348 IPR036640 GO:0005524|GO:0016020
Seca2g04670 1371 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 450 686 IPR003439 GO:0005524
Seca2g04670 1371 SUPERFAMILY ABC transporter transmembrane region 91 434 IPR036640 GO:0005524|GO:0016020
Seca2g04670 1371 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 782 1069 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca2g04670 1371 ProSitePatterns ABC transporters family signature. 589 603 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04670 Seca-Chr2 132861467 132868201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04670 50 1366 Calmodulin-binding Proteins AT2G36910 86.343 0.0 2313