Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04658 ATGGCTAATCAACCCGAGTCATCCGATTCTAAGGGAACGAAGAGGGACTTCAGTACGGCGATTTTGGAGCGCAAGAAGGCGCCGAATCGCCTCGTAGTTGACGAGGCCGTCAACGATGACAACTCTGTTGTTGCTCTTCACCCAGATACCATGGAGAAGCTCCAGCTCTTCCGCGGTGACACCATATTGATCAAGGGAAAGAAAAGGAAAGATACAATCTGTATTGCACTTGCTGATGACACATGCGAGGAACCAAAAATAAGGATGAACAAGGTTGTGAGAAATAATCTTAGGGTTAGGCTTGGAGATGTTGTTTCAGTTCATCAATGTGCTGATGTCAAGTATGGAAAGCGAGTACACATTCTTCCTGTGGATGACACTATTGAAGGAGTAACGGGGAATCTCTTTGATGCGTACTTAAAACCTTATTTCCTGGAGGCATATCGACCAGTGAGGAAGGGAGACCTCTTCCTTGTGAGAGGGGGGATGAGAAGTGTAGAATTCAAGGTTATTGAAACTGATCCTTCTGAGTACTGTGTTGTCGCCCCAGACACAGAGATCTTCTGTGAAGGAGAGCCTGTTAAAAGGGAAGATGAGAATCGATTAGATGAGGTTGGTTATGATGATGTCGGTGGTGTAAGAAAGCAGATGGCACAGATTCGGGAACTAGTGGAACTGCCACTGAGGCACCCACAGTTATTCAAGTCTATTGGTGTTAAGCCACCGAAAGGAATTCTGCTTTATGGACCCCCTGGATCTGGCAAAACTTTAATTGCTCGAGCAGTTGCAAATGAAACTGGTGCCTTCTTTTTCTGCATCAATGGCCCTGAGATCATGTCAAAATTGGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAGGAAGCAGAGAAGAATGCACCATCCATCATCTTCATTGATGAGATAGATTCAATAGCTCCGAAGAGGGAGAAGACTCATGGTGAAGTTGAGCGAAGGATTGTTTCCCAGCTTTTGACCCTCATGGATGGGCTTAAATCACGCGCCCATGTAATTGTTATTGGAGCCACAAATCGCCCCAATAGCATTGACCCAGCCCTTAGGAGGTTTGGAAGGTTTGATCGGGAGATAGATATTGGTGTTCCAGATGAAGTCGGGCGTCTTGAGGTTCTTCGAATCCATACAAAGAATATGAAGCTTGCTGAAGATGTTGATTTAGAAAGGATTGCCAAGGACACACATGGCTATGTTGGTGCTGATCTGGCTGCTTTGTGTACTGAAGCAGCACTTCAATGTATTAGAGAGAAGATGGATGTGATTGACTTGGAAGATGAATCAATTGATGCTGAAATATTGAACTCCATGGCAGTGACAAATGAGCATTTCCAGACAGCTCTTGGATCAAGCAATCCTTCTGCTCTCCGTGAAACAGTAAGTATTTTATCCGTTGTTGAAGTGCCCAATGTCAGCTGGGAAGATATTGGTGGTCTTGAAAATGTTAAGAGGGAACTCCAAGAGACTGTTCAATATCCAGTGGAGCACCCTGAAAAATTTGAGAAGTTCGGAATGTCCCCTTCAAAGGGAGTTCTTTTCTATGGTCCTCCTGGGTGTGGTAAAACACTTTTGGCAAAAGCTATTGCCAATGAATGTCAGGCAAACTTCATCAGTGTCAAAGGTCCTGAGCTACTCACTATGTGGTTTGGAGAAAGTGAGGCTAACGTGAGGGAAATTTTTGACAAGGCTCGTGGATCTGCTCCATGTGTCCTATTCTTTGATGAACTTGACTCCATTGCAACTCAGAGGGGAAGTAGTGTAGGAGATGCTGGTGGTGCTGCTGACAGGGTTTTGAACCAACTGCTTACTGAAATGGATGGGATGTCAGCAAAGAAAACTGTGTTCATCATTGGGGCCACTAATCGACCAGACATTATAGACCCAGCTCTTTTGCGTCCAGGCCGTTTAGACCAGTTGATTTATATCCCCCTCCCAGATGAGGATTCCCGTCATCAGATATTTAAAGCTTGCTTGAGAAAATCCCCAATCTCAAAAGATGTTGATCTTAGAGCTCTTGCAAAGTACACCCAAGGCTTTAGTGGTGCTGATATTACTGAGATTTGCCAGCGTGCATGCAAGTATGCCATAAGAGAGAACATTGAGAAGGACATTGAGAGGGAGAGGAGGAGAAGAGATAACCCTGAGGCCATGGAAGAGGACATTGAAGATGATGTAGCTGAAATCAAGGCAGCTCATTTTGAGGAATCGATGAAGTATGCACGAAGGAGTGTGAGCGATGCTGACATCCGCAAGTACCAGGCATTTGCCCAAACATTGCAGCAATCTAGAGGGTTTGGAACTGAGTTTAGGTTTTCGGATAACAGCTCTGGTGGTGGTGGTGGTGCTGCATCTGACCCGTTTGCAGCTGCTGGTGGAGCTGATGAAGATGATCTTTACAGTTAG 2439 0.4526 MANQPESSDSKGTKRDFSTAILERKKAPNRLVVDEAVNDDNSVVALHPDTMEKLQLFRGDTILIKGKKRKDTICIALADDTCEEPKIRMNKVVRNNLRVRLGDVVSVHQCADVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPSEYCVVAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERIAKDTHGYVGADLAALCTEAALQCIREKMDVIDLEDESIDAEILNSMAVTNEHFQTALGSSNPSALRETVSILSVVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARGSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQIFKACLRKSPISKDVDLRALAKYTQGFSGADITEICQRACKYAIRENIEKDIERERRRRDNPEAMEEDIEDDVAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRFSDNSSGGGGGAASDPFAAAGGADEDDLYS. 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04658 812 MobiDBLite consensus disorder prediction 778 812 - -
Seca2g04658 812 Pfam Cell division protein 48 (CDC48), domain 2 132 195 IPR004201 -
Seca2g04658 812 FunFam Transitional endoplasmic reticulum ATPase 468 656 - -
Seca2g04658 812 FunFam Cell division control 48 113 209 - -
Seca2g04658 812 SUPERFAMILY Cdc48 domain 2-like 112 204 IPR029067 -
Seca2g04658 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 204 471 IPR027417 -
Seca2g04658 812 CDD RecA-like_CDC48_r2-like 494 654 - -
Seca2g04658 812 SMART AAA_5 241 377 IPR003593 GO:0016887
Seca2g04658 812 SMART AAA_5 519 658 IPR003593 GO:0016887
Seca2g04658 812 PANTHER AAA-FAMILY ATPASE 407 774 - -
Seca2g04658 812 SMART CDC48_N_2 30 113 IPR003338 -
Seca2g04658 812 FunFam Transitional endoplasmic reticulum ATPase 206 374 - -
Seca2g04658 812 NCBIfam CDC48 family AAA ATPase 31 772 IPR005938 GO:0016787
Seca2g04658 812 Gene3D - 376 470 - -
Seca2g04658 812 ProSitePatterns AAA-protein family signature. 626 644 IPR003960 GO:0005524|GO:0016887
Seca2g04658 812 Pfam Cell division protein 48 (CDC48), N-terminal domain 30 111 IPR003338 -
Seca2g04658 812 ProSitePatterns AAA-protein family signature. 345 363 IPR003960 GO:0005524|GO:0016887
Seca2g04658 812 Pfam AAA+ lid domain 678 718 IPR041569 -
Seca2g04658 812 Pfam AAA+ lid domain 397 439 IPR041569 -
Seca2g04658 812 CDD RecA-like_CDC48_r1-like 209 374 - -
Seca2g04658 812 Gene3D - 113 209 - -
Seca2g04658 812 Pfam ATPase family associated with various cellular activities (AAA) 245 374 IPR003959 GO:0005524|GO:0016887
Seca2g04658 812 Pfam ATPase family associated with various cellular activities (AAA) 523 656 IPR003959 GO:0005524|GO:0016887
Seca2g04658 812 Gene3D - 210 374 IPR027417 -
Seca2g04658 812 FunFam Cell division control 48 376 467 - -
Seca2g04658 812 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 481 769 IPR027417 -
Seca2g04658 812 Gene3D - 472 656 IPR027417 -
Seca2g04658 812 Gene3D - 660 768 - -
Seca2g04658 812 Gene3D - 7 112 - -
Seca2g04658 812 SMART CDC48_2_2 130 196 IPR004201 -
Seca2g04658 812 SUPERFAMILY ADC-like 27 110 IPR009010 -
Seca2g04658 812 FunFam Transitional endoplasmic reticulum ATPase 7 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04658 Seca-Chr2 132702309 132707040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04658 447 715 Calmodulin-binding Proteins AT3G56690 47.584 3.68e-78 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04658 K13525 - gmx:100791603 1525.76