LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g04652	ATGGCGGTTGCTGAGAATGTTGGGGCAAAAATCGGTTCTTCGAGTCAAAATTTGGACAACAGTGTAGTGTCATCGGACTCAAGTGAGGTTGAGAAATCGAAAACCAGAAGCGATCAGAATCTGAATAACGGTGTGTTCAACCATCAACACCAAGATAGAGTTCCGAGTAATTTATCAGTTCCTAATGGTAATTACAACTACAAGGCTCAAGTGGGTCAGATGAACACAAATGGGGTCCAAAACCAACAGTTGGTGCTGAACAATGATGGATATGAGATTGATGGGATCAGAACCGGGGAGAATGGAAGTGAGGGTTTTAAGGGTGATATGAGGGAATTGGAAGAACTGTTGTCAAAGCTGAATCCCATGGCTGAGGAATTTGTGCCCCCCTCACTAACAAATAATCATGGCTATTTAGCTGGACCTAATGCTGGGTTTGGTTACACTAACAATTTTATACTTCACAATAATTATGGCAATGCTAATGGACAGACTAACAGAAGGTACAATATTAATGTGCTACAGAGGAAGAATGGCTATGCTTCTGGGAAGCGTAGAGTGAATCATAAAATGGATATGGAGAAAAGAGAAGAGATGATTCAGAGGACTGTTTATGTGTCTGATATTGATCAACTGGTTACTGAAGAGCAGTTGGCAGCTCTCTTTCTTAACTGTGGCCAGGTTGTTGATTGTCGTGTGTGTGGGGATCCCAATTCTATTCTTCGGTTCGCCTTCATTGAGTTTACAGATGAAGAAAGTGCAAGGGCTGCTCTGAACCTGTCTGGAACGATGCTTGGATACTACCCATTGAGAGTGCTACCTTCAAAAACTGCCATTGCACCTGTTAATCCAACATATTTGCCCAGGTCTGAAGATGAAAGGGAGATGTGCTCAAGAACAATTTATTGCACAAATATCGACAAGAAGCTTACTCAAGCAGATGTGAAAAACTTCTTTGAATCTATCTGTGGCGAGGTTCAACGGTTGAGGCTTCTTGGTGATTACCATCATTCAACTCGAATTGCTTTTGTTGAATTCAAAATGGCTGAGAGTGCAATTGCAGCCCTGAGCTGTAGTGGTGTGATTTTGGGTACACTGCCTATAAGGGTAAGTCCATCAAAGACACCAGTCCGTTCCCGTGCTCCTCGCACTGCTATGCACTGA	1164	0.4278	MAVAENVGAKIGSSSQNLDNSVVSSDSSEVEKSKTRSDQNLNNGVFNHQHQDRVPSNLSVPNGNYNYKAQVGQMNTNGVQNQQLVLNNDGYEIDGIRTGENGSEGFKGDMRELEELLSKLNPMAEEFVPPSLTNNHGYLAGPNAGFGYTNNFILHNNYGNANGQTNRRYNINVLQRKNGYASGKRRVNHKMDMEKREEMIQRTVYVSDIDQLVTEEQLAALFLNCGQVVDCRVCGDPNSILRFAFIEFTDEESARAALNLSGTMLGYYPLRVLPSKTAIAPVNPTYLPRSEDEREMCSRTIYCTNIDKKLTQADVKNFFESICGEVQRLRLLGDYHHSTRIAFVEFKMAESAIAALSCSGVILGTLPIRVSPSKTPVRSRAPRTAMH.	388

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g04652	387	MobiDBLite	consensus disorder prediction	9	28	-	-
	Seca2g04652	387	SUPERFAMILY	RNA-binding domain, RBD	186	279	IPR035979	GO:0003676
	Seca2g04652	387	SMART	rrm1_1	203	273	IPR000504	GO:0003723
	Seca2g04652	387	SMART	rrm1_1	300	371	IPR000504	GO:0003723
	Seca2g04652	387	MobiDBLite	consensus disorder prediction	1	61	-	-
	Seca2g04652	387	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	202	277	IPR000504	GO:0003723
	Seca2g04652	387	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	301	364	IPR000504	GO:0003723
	Seca2g04652	387	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	204	267	IPR000504	GO:0003723
	Seca2g04652	387	SUPERFAMILY	RNA-binding domain, RBD	289	380	IPR035979	GO:0003676
	Seca2g04652	387	CDD	RRM2_CID8_like	295	376	IPR034825	-
	Seca2g04652	387	FunFam	Polyadenylate-binding protein-interacting protein 11	167	279	-	-
	Seca2g04652	387	CDD	RRM1_CID8_like	200	279	IPR034823	-
	Seca2g04652	387	Gene3D	-	284	382	IPR012677	-
	Seca2g04652	387	Gene3D	-	160	279	IPR012677	-
	Seca2g04652	387	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	299	375	IPR000504	GO:0003723
	Seca2g04652	387	Pfam	Ataxin-2 C-terminal region	117	131	IPR009818	-
	Seca2g04652	387	MobiDBLite	consensus disorder prediction	37	61	-	-
	Seca2g04652	387	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR	115	380	-	-
	Seca2g04652	387	FunFam	Polyadenylate-binding protein-interacting protein 10	293	371	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g04652	Seca-Chr2	132621819	132626985	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g04652	204	363	Eukaryotic Initiation Factors Gene Family	AT1G34140	25.610	1.38e-10	60.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g04652	-		-	gmx:106794116	611.298