Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04640 ATGAAGGGTGGGATTCTTGTTACAGATGATGCTGGTGGGGATTCCTATTCTAGGCGTAGCAAGGAATTGACTGAAGGATATAGAGATTATGCACAAGCCAATCCTCATAGGAAAAATAAAAAAGGTGACGGGAAAGGCGTATGTTACGATTGCTTGAGTGGCGGAATACTCTTGCGCTGCTGTGGAAAAGGATGTCAAAGGAGGTACCATCCCTCCTGTGTGGATCCTCCTCTTAATTATATTCCTCCTGGGTTTTGGCATTGTATTTGGTGTGTTAAGAAAAAGATAGAGTTTGGTTTGCATTCTGTTTCTGAAGGGGTGGAATCCATCTTGGATTCCAGAGAAGTGATTTCAGAAACTGAAGTGATGCAAAGAGAGTACTTTGTCAAGTATCAGGGCCTTGCTCATGCTCACAACTGCTGGATTCCAGAAAGACAAATACTTCTTGAGGCCCCAAAGCTTTTGGCAAAGTTTAAGAAGAAACTGCAGGTTGTAAGGTGGAAAAGAGATTGGACTATACCTCACCGCTTGCTTCTAAAAAGGGCAATTATATTACCAAAGCAACATGATCAACATTTTGGTGGGCATGAAGACAGTGGTTTCATTTACCGTTATGAGTGGCTTGTAAAATGGAATGGCCTTGGTTATGATCATGTTACATGGGAGTTAGATGATGCTTCATTTATGACGTCATCTGAAGGCATGAAACTCATAGACGATTATGAAAGTCGTTGGAAGAGAGCAGTTAGACTGTCAAATTCTTTTGAAGCCAATAGGAGAAAGGCTTCATTTGCTGAATTATCAGTGCTACCATTTGGAGATTCACCAGGATTTTATAACCAGCATTTATGTTATGTGAACAAGCTTTGCATGTGTTGGCACAAAAGTCAGAGTGCTCTTATTGTAGATGATCAAATTGACCAGGAGCGGGTTATGAAGGTGATTTTGTTTATATTATCTTTGAATTGTAATGTGAAGAAGCCTTTTCTCATCATCTCAACTTCCACTGGCCTCTCTGTTTGGGAAACAGAATTCTCACATTTGGCACCATCTGCCAATCTTGTAGTTTACAAGGGAAACAAAGATGTACGCTCTGGCATCAGGGCATTAGAGTTTTCTAATGAACATGGTGGCGTCTTATTTCAAATATTATTGTCATCTTCTGATATTGTTGTTGAGGACATACATGCACTAAGATGCATTCCATGGGAAGCGATTATAATTGATGAATGCCAGCGATCTAGAATTTTAGGACACTTTGAAAATTTTAAGACTCTAGCAGCTGAGATGAGGCTCCTTATCGTCAGTGGACAAATCAAGGAAGATCGAGCTGATTATATCAAATTGCTTTCATTCCTTAAGTCAGGACATCATGAGTTAAATATGTGTCAAATGGAGACTTTCTTCAGTGCTAGCATTTCCAATTTGAAGAGCCAATTAGAACAATATGTTGCATTTAAATGCAATTCAAGCTCCACTAGGTTTGTAGAGTATTGGGTTCCTGCCCAGCTTTCCAGTTTGCAGCTTGAGCAGTATTGTTCAATGCTGCTTTCAAACTCAATGCTGTTATGCTCAGGCCAAAAGTTTGACTCAGTTGATGCCCTCCGTGAACTTATTACCTCAACAAGGAAGTGCTGTGACCACCCTTATCTCCTAGATCAGTCACTGCATAATTTTATCACTGGAGGTCTACCTGTTGAAGAGCATTTAAATATTGGAATAAAAGCAAGTGGAAAACTGCTACTTCTTGAAAAAATCCTTTTTGAAGTAAGAAGATGTGGGTTAAGAGTGATAATATTATTTCAGTCAAGTGGTGGTTCTGGATCAATTGGAAATATTTTGGATGATGTTCTCTGTCAGAGATTTGGTAAAGATTGCTATGTACGATATGGTAGAGGTTATATCCCATCAAAGAAGCAAGCTGCATTGGACACATTTAATGACAAAGAAGGTGGAAAATTTGTCTTTTTGTTGGAAAACCGAGCTTGTGTCCCTAGCATTAAGCTTTCATCAGTGGATATTATTATATTATTTGACAGTGATTGGGACCCACAAAATGACCTAAGATGCTTACAAAAGATGTCTATCAGCTCACAGTTCAAACAGTTAACAGTTTTAAGATTGTACTCATACTTCACAGTTGAAGAAAAGGTTTTAATGCTTGCAAAAGAGGGTATAACTCTTGACGGCAATATGCAGTCAATTAACCTGAATACATGTCACACCCTGTTAAAATGGGGTGCCTCCTATCTGTTCAATAAGCTTGATGACTTACATGGCAGTGGCACCTCAGTTTCTGCTCGAGATATCTCTTCTGATCAGTCACTTCTAAGTGATGTAATCTGTGAATTATCATCCAAATTGGTTTGTTGTGCTGGTGATACTGATTGTCATGGATCTTCATTTATATCTAGAGCAAAGCAGAATGGAGGGGAATATGCAAGGAACATTTTATTACTAGGAGAAAGAGAAATGAAGGATTTGGGCAATGAGCCTTATGCTTTTTCCTGGAGCGATCTCCTCAAAGAAAGGTATCCTCAATGGAAGTTTTTATCTGTTTCATCTCAGAGGATCAGGAAAACAGTCAAACATTTTGATCACATACTAAAAGAATCTGAATGTGAAATTGATGCCATTTTAAGAGAGAGGATGTCCAAGGATAATGCGGATCCCAAGAGGAGAAAAGTGTCCAAGGATAATGTTGATCCCAAGGGGAGGAAAGTGACCGAGGATAATGTTGATCCCAACAGGAAAGTTTCCAAGGATATTGTTCATACGAAGGGAATGAAATTGTTAAAGGATGTAGTTGATCCTAAGATTAGGAAGGTGACCAAGGATATTATTGATGCGAAGAGGAGGGAAGTGTCCACCGATATTGTTAATTCCAAGAGCAAGAAAGTGTTCAAGGATATCGTTGATTCCAAATATCGAAAAACAAGGACGAAGAACAAGAAGAATCTATGTGCTAGCAATAGGGCAAGCAAATTGAATGGTAGTAGGATTGGTTTTTCTAAGGCGGCACTTGATTCCATAGTGCATCCTTTAACCAATGAAATCACAGGAGCTGCTGTAATAGACATACAATTTTTAGAACAAAAGAAACTGCCTGACATGCCAAAGCCCGATATATCAGGTCTCTGTGATGTTCTACATTTTTCGAAAAACATCAAGGCTGTTGCCATGAAGATTCTTGAGCATATATTCAAACATTACAATGTTAATTGCCTAGAAGTTTCTACCATGCAGGCATTTGAAATATCTGTGTGTTGGCTAGCAGCTTCTTTGTTGAAGCATGAGATTGATAGGAAAGATTCACTTGATCTTGCAAAACTGTACTTGAATTTTTATTGCAATGAGGAAGAAGTCACTGATGTTTTCTCTGAACTGTGGAAGCATAAGAAAGATTTTTCAAGTTGTTTACAAAATGGACTTTATGCTGAGAAATGTAACATAAATGGTGCTTCAGACTCCATGACACCTGAGCTGAAAGATTTGGCAGAGGAGGAGAAGCAGAAGGGTTTTCAGGGTTCTCATGATTTAAATCTCATGAAATCTGCAACAAATGAACAAGATCTTCGAAGAAAGTCTCCCACCACAACGGTGCTATCTTCACAAGACCAGACTTGTAGAGAAACATTTCATAGTGGACCTTACACAGCTCATGAAATTTGTCCATCTCAGAAGACACCTGATAGTTTGGCTGTGGAAGCTGATGCTATCTCCATGGAATCTGATGCAGATGAGGGATTAGATGCTCTGACCTCAGTAAAAGAAGTTTCATTCCATGAACACTGGAATGAAGTCCCTAATTCATGTAATGATCCTAATAATGTCAACCATGTCACAGGTTCTTTGGAAAGACAGAGTCCTGTTATAGGTACAGAGATTGCACAGTCTGATGGCAAAGTTTATGAAGATCCTCAAATTTTAATGAATGAAGTGATTGCTATTGATAATTCTCTAAGTATGTCAACTCATCCTGTGCATCATAATAGTGATGAGACAGATGCTGTAACTTGCGATAGTACTGCTGTTCCTGAGGTCAGACAGTGGTACAATATAGTGAGCCCTGTATTTGGTGAGTCGACTACTTTGGAGTTTGCTGAGACTACCTTACCACCATGTATGCAACCATCAGATGAAAATTTGTTGCCATTGCCTCAGATGGCTATGTTCTCCATTCCATCTTTTTTGGAGGACAATTTACCTAGTACAGTCATACCTCTAGATGATTCTTTTTATCATAGTGGTGGAGATCATTGTTACATTCACGAGGCTGAAGTAATATTGCAAGAACCATTTGACCCAATGGAACCAGTTAACTCTTCCTTTGTTTCACCCGTGACACTGCAACCCTCCATTAGTGTGCCCCAGCCCATCGATGAAAATACCACACATTTTCCTCATGGCATTACTAATCCTGGATATATAGACAGTGATACTTTTCAAGCTCACTCTGTGACATCTGAAATGCCCCACTTTGCATACTCAGATCCATTGCTAATTGAAATGGAGAGAATAGAAAAGATGAATGAAGAAGCCTTCAATATACATGAGAAAAAAATTTTGCAGCTCCAATCTGACTACAAAAAGGAGTTTGAAGAGTTAGGTGAAAAGTACAGAATGTTGCTTCAGAATGTCAATACCGCAGTAGAACTGAAGAGGAGGGAACTTGAGACACAATGTAAATTAGTTCTCATGAATAAAGTATTAGCTGAGCACTGGATCCAAAAGCTTGATGGTTGCAAAAGATCTGCAGAACAATACACAGAACAAGTGGCAATGCCTAACTGCTCAAGTTCTCATGTATCAAGGCACCATGCCTCACATATACCTGCTCAAAGATGTGAACAATTTACGGAACATCCACCCATAATTCAGCCATCCTTGTCCATTCCCACGGTGGTGGTTAATCCTGCAACAACCCAAAATACTATATCAGCAATTGCCTCCGATTTAACTCAATTGCAACATCAGTGA 4980 0.392 MKGGILVTDDAGGDSYSRRSKELTEGYRDYAQANPHRKNKKGDGKGVCYDCLSGGILLRCCGKGCQRRYHPSCVDPPLNYIPPGFWHCIWCVKKKIEFGLHSVSEGVESILDSREVISETEVMQREYFVKYQGLAHAHNCWIPERQILLEAPKLLAKFKKKLQVVRWKRDWTIPHRLLLKRAIILPKQHDQHFGGHEDSGFIYRYEWLVKWNGLGYDHVTWELDDASFMTSSEGMKLIDDYESRWKRAVRLSNSFEANRRKASFAELSVLPFGDSPGFYNQHLCYVNKLCMCWHKSQSALIVDDQIDQERVMKVILFILSLNCNVKKPFLIISTSTGLSVWETEFSHLAPSANLVVYKGNKDVRSGIRALEFSNEHGGVLFQILLSSSDIVVEDIHALRCIPWEAIIIDECQRSRILGHFENFKTLAAEMRLLIVSGQIKEDRADYIKLLSFLKSGHHELNMCQMETFFSASISNLKSQLEQYVAFKCNSSSTRFVEYWVPAQLSSLQLEQYCSMLLSNSMLLCSGQKFDSVDALRELITSTRKCCDHPYLLDQSLHNFITGGLPVEEHLNIGIKASGKLLLLEKILFEVRRCGLRVIILFQSSGGSGSIGNILDDVLCQRFGKDCYVRYGRGYIPSKKQAALDTFNDKEGGKFVFLLENRACVPSIKLSSVDIIILFDSDWDPQNDLRCLQKMSISSQFKQLTVLRLYSYFTVEEKVLMLAKEGITLDGNMQSINLNTCHTLLKWGASYLFNKLDDLHGSGTSVSARDISSDQSLLSDVICELSSKLVCCAGDTDCHGSSFISRAKQNGGEYARNILLLGEREMKDLGNEPYAFSWSDLLKERYPQWKFLSVSSQRIRKTVKHFDHILKESECEIDAILRERMSKDNADPKRRKVSKDNVDPKGRKVTEDNVDPNRKVSKDIVHTKGMKLLKDVVDPKIRKVTKDIIDAKRREVSTDIVNSKSKKVFKDIVDSKYRKTRTKNKKNLCASNRASKLNGSRIGFSKAALDSIVHPLTNEITGAAVIDIQFLEQKKLPDMPKPDISGLCDVLHFSKNIKAVAMKILEHIFKHYNVNCLEVSTMQAFEISVCWLAASLLKHEIDRKDSLDLAKLYLNFYCNEEEVTDVFSELWKHKKDFSSCLQNGLYAEKCNINGASDSMTPELKDLAEEEKQKGFQGSHDLNLMKSATNEQDLRRKSPTTTVLSSQDQTCRETFHSGPYTAHEICPSQKTPDSLAVEADAISMESDADEGLDALTSVKEVSFHEHWNEVPNSCNDPNNVNHVTGSLERQSPVIGTEIAQSDGKVYEDPQILMNEVIAIDNSLSMSTHPVHHNSDETDAVTCDSTAVPEVRQWYNIVSPVFGESTTLEFAETTLPPCMQPSDENLLPLPQMAMFSIPSFLEDNLPSTVIPLDDSFYHSGGDHCYIHEAEVILQEPFDPMEPVNSSFVSPVTLQPSISVPQPIDENTTHFPHGITNPGYIDSDTFQAHSVTSEMPHFAYSDPLLIEMERIEKMNEEAFNIHEKKILQLQSDYKKEFEELGEKYRMLLQNVNTAVELKRRELETQCKLVLMNKVLAEHWIQKLDGCKRSAEQYTEQVAMPNCSSSHVSRHHASHIPAQRCEQFTEHPPIIQPSLSIPTVVVNPATTQNTISAIASDLTQLQHQ. 1660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04640 1659 Pfam Chromo (CHRromatin Organisation MOdifier) domain 107 161 IPR023780 -
Seca2g04640 1659 ProSiteProfiles Chromo and chromo shadow domain profile. 105 170 IPR000953 -
Seca2g04640 1659 MobiDBLite consensus disorder prediction 885 913 - -
Seca2g04640 1659 Gene3D - 106 164 - -
Seca2g04640 1659 Pfam SNF2-related domain 291 551 IPR000330 GO:0005524|GO:0140658
Seca2g04640 1659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 496 752 IPR027417 -
Seca2g04640 1659 SUPERFAMILY Chromo domain-like 64 164 IPR016197 -
Seca2g04640 1659 SMART PHD_3 47 92 IPR001965 -
Seca2g04640 1659 ProSiteProfiles Zinc finger PHD-type profile. 45 94 IPR019787 -
Seca2g04640 1659 SMART chromo_7 170 246 IPR000953 -
Seca2g04640 1659 SMART chromo_7 104 163 IPR000953 -
Seca2g04640 1659 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 103 1347 - -
Seca2g04640 1659 Gene3D - 1496 1578 - -
Seca2g04640 1659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 99 IPR013083 -
Seca2g04640 1659 ProSitePatterns Zinc finger PHD-type signature. 48 91 IPR019786 -
Seca2g04640 1659 Gene3D - 165 244 - -
Seca2g04640 1659 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 458 IPR027417 -
Seca2g04640 1659 SUPERFAMILY Chromo domain-like 198 244 IPR016197 -
Seca2g04640 1659 Gene3D - 282 493 IPR038718 -
Seca2g04640 1659 Gene3D - 494 729 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04640 Seca-Chr2 132463113 132492089 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca2g04640 SNF2_N 3.1e-07 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04640 - K11643 gmx:100813574 1872.83