Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04639 ATGGAGGCAACTATCATGAGCAACGGTCACCACCAAAGCCAAAACGGTTCGTTTTGCTTGACTAGCAATGCTACTACTACTAAAGCCAGCAGTGACCCATTGAATTGGGGTCTGGCGGCGGAGTCAATGAAGGGAAGCCACTTGGATGAGGTGAAGCGAATGGTGGAGGAGTACCGGAAACCGGTGGTGCGGCTCGGCGGCGAGACTCTGACGATCGCGCAGGTCGCAGCCATCGCCGGTCACGAGCAAGGCGTGATGGTGGAACTGTCCGAGTCAGCAAGAGCTGGCGTTAAGGCGAGTAGTGATTGGGTGATGGAAAGCATGAATAAAGGCACTGACAGTTATGGAGTCACCACTGGCTTCGGTGCCACCTCTCACCGCCGAACCAAACAAGGTGGCGCTTTGCAAAAAGAGCTCATCAGGTTTTTGAACGCTGGAATATTTGGTAATGGTACCGAGTCAAGTCATACATTGCCACACTCTGCAACCAGAGCAGCCATGTTAGTGAGAATTAACACTCTTCTCCAAGGGTACTCAGGCATTAGATTTGAAATCTTAGAAGCCATCACCAAGCTCATCAACAACAATGTTACCCCATGTTTACCACTTCGTGGTACAATTACAGCTTCGGGAGATCTGGTCCCTCTTTCTTACATTGCTGGTTTGCTTATTGGCCGACCTAATTCCAAAGCTGTTGGACCCTCTGGAGAGGTACTTAATGCTAAGGAAGCTTTCCAATCGGCTGGAATCAACTCTGACTTCTTTGAATTACAACCTAAGGAAGGTCTTGCCCTTGTTAATGGCACTGTTGTTGGTTCTGCCTTAGCTTCTATTGTTTTATTTGAGGCAAACATATTAGCTGTGTTGTCTGAAGTTCTATCAGCTATTTTTGCTGAAGTGATGCAAGGGAAACCTGAATTTACTGACCATTTGACACATAAGTTAAAGCACCACCCTGGTCAAATTGAGGCTGCTGCTATTATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAGCAGCCAAGAAGTTGCACGAGATAGATCCCTTGCAGAAGCCAAAACAAGATCGATATGCACTTAGAACTTCACCACAATGGCTTGGTCCTCTTATTGAAGTGATTCGATTCTCAACCAAGTCAATTGAGAGGGAGATTAACTCTGTGAACGATAACCCTTTGATTGATGTTTCAAGGAACAAGGCATTGCATGGTGGTAATTTCCAAGGAACCCCTATTGGAGTCTCTATGGACAACACACGTTTGGCTCTTGCATCAATTGGTAAACTCATGTTTGCTCAGTTCTCTGAGCTTGTCAATGATTTTTACAACAATGGGTTGCCTTCAAATCTCTCTGCTAGTAGAAATCCTAGCTTGGATTATGGTTTCAAGGGAGCTGAAATTGCCATGGCATCTTATTGCTCCGAACTCCAATACCTTGCAAATCCGGTCACAAGTCATGTTCAAAGTGCTGAACAACATAACCAAGAAGTGAACTCTTTGGGTTTGATTTCTTCTAGAAAGACAAACGAAGCCATTGAGATCCTTAAGCTCATGTCTTCCACGTTCTTGATTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAGGAGAATTTGAAAAACTCGGTCAAAAACATTGTAAGCCAGGTTGCTAAGAGGACTCTTACCACAGGTGTCAATGGAGAACTCCATCCTTCCAGATTTTGTGAAAAGGATTTGCTGAAAGTGGTTGATAGGGAGTATGTATTTGCCTATATCGATGACCCATGCAGTGCTACATACCCATTAATGCAAAAACTCAGGCAAGTGCTTGTGGATCATGCATTAGTTAATGGAGAAAATGAGAAGAATTTGAACACGTCAATCTTTCAAAAGATTGCAACTTTCGAGAATGAGTTGAAGACTCTTTTGCCGAAGGAGGTGGAAAGTGCAAGAGTTGCATATGAGAATGGCAATTCAACAATTCCAAACAAAATCAATGAATGCAGATCTTACCCATTGTACAAGTTTGTGAGGGAGGAGTTAGGAACAGGATTGCTAACCGGAGAAAAAGTAAGGTCACCAGGTGAGGAGTTTGACAAACTATTCACAGCAATGTGCCAGGGTAAAATTATTGATCCTCTTCTGCAATGCCTTGGGGAGTGGAATGGTGCTCCTCTTCCAATTTGTTAA 2172 0.4415 MEATIMSNGHHQSQNGSFCLTSNATTTKASSDPLNWGLAAESMKGSHLDEVKRMVEEYRKPVVRLGGETLTIAQVAAIAGHEQGVMVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLINNNVTPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAVGPSGEVLNAKEAFQSAGINSDFFELQPKEGLALVNGTVVGSALASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQEVNSLGLISSRKTNEAIEILKLMSSTFLIALCQAIDLRHLEENLKNSVKNIVSQVAKRTLTTGVNGELHPSRFCEKDLLKVVDREYVFAYIDDPCSATYPLMQKLRQVLVDHALVNGENEKNLNTSIFQKIATFENELKTLLPKEVESARVAYENGNSTIPNKINECRSYPLYKFVREELGTGLLTGEKVRSPGEEFDKLFTAMCQGKIIDPLLQCLGEWNGAPLPIC. 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04639 723 PANTHER HISTIDINE AMMONIA-LYASE 28 723 IPR001106 -
Seca2g04639 723 Pfam Aromatic amino acid lyase 70 548 IPR001106 -
Seca2g04639 723 Gene3D - 536 657 IPR023144 -
Seca2g04639 723 NCBIfam phenylalanine ammonia-lyase 32 712 IPR005922 GO:0005737|GO:0006559|GO:0016841
Seca2g04639 723 Gene3D Fumarase/aspartase (Central domain) 271 718 - -
Seca2g04639 723 CDD PAL-HAL 68 533 IPR001106 -
Seca2g04639 723 FunFam Phenylalanine ammonia-lyase 536 657 - -
Seca2g04639 723 FunFam Phenylalanine ammonia-lyase 23 269 - -
Seca2g04639 723 SUPERFAMILY L-aspartase-like 32 723 IPR008948 GO:0003824
Seca2g04639 723 FunFam Phenylalanine ammonia-lyase 270 582 - -
Seca2g04639 723 Gene3D - 22 269 IPR024083 -
Seca2g04639 723 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 205 221 IPR022313 GO:0016841
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04639 Seca-Chr2 132459430 132462622 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04639 8 723 Monolignol Biosynthesis Gene Families AT2G37040 81.994 0.0 1249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04639 K10775 - gmx:100787902 1313.52