Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04631 ATGCTTTTTCAGGAATTTGCAGTGAAAAAAAGTTTCTGTCTAGCTCCAAGTGACATGAAGGCGTGTATGGAGTCAAAGGAAGAGAAATTGAAAGAGGTGGTGGATAAGTGTTTAGATTCTCAGCTATGGCATGCTTGTGCTGGTGGAATGGTGCAAATGCCAGCGGTGAATGCTAAGGTCTTCTACTTCCCCCAGGGACACGCTGAGCATGCATGTGAACCAGTGGACTTCAGGGCTTACTACAAAATTCCACCTTTTGTTCAATGCAGAGTTGCAGCTATCAAATACATGGCTGATAATGAGACAGATGAGGTGTACGCAAAACTTAGGCTTGTTCCTTTGCTAAGTAACGATGCTGATTTTGAGGATGATGGTGGTGTTGGTGGCATAAACGGGTCTGAAACTAAGGATAAACTCCCTTCTTTTGCAAAAACCTTGACACAATCTGATGCAAACAATGGTGGTGGCTTTTCTGTTCCTAGATACTGTGCAGAAACAATTTTCCCTCGTTTAAACTATTCTGATGACCCTCCAGTTCAAAACATCTTTGCTAAAGATGTTCATGGTGAGATATGGAAATTCAGGCACATTTATAGGGGCACTCCAAGGCGGCATCTTTTAACCACTGGGTGGAGTAGTTTTGTCAATAACAAGAAGCTTGTTGCAGGGGATTCAATTGTGTTTCTGAGAGCAGAAAATGGGGATCTTTGTGTTGGAATTAGAAGGGCTAAAAGGGGAATTGGTGGTGGACCTGACCCTTCATCAGGGTGGAATCCAGCAGGTGGAATTCATTCTGTACCTTATGGAGGATTTTCAGGCTTTTTGGGAGAGGAAGATAACCAACACCTGAGAAATGGTCATGGGAATGGTTTGAGCACAAGTACAACACTGATGGGTAGAGGGAAGGTGAGGGCCCAAGCAGTTATTGAAGCTACAACTCTTGCTTCCAATATGCAACCCTTTGAGGTGGTGTACTATCCTAGAGCAAGTACTCCAGAGTTTTGTGTGAAGTCCTCTTTAGTTAGAACAGCAATGCAGATTAGGTGGTGTCCTGGAATGAGGTTCAAGATGCCCTTTGAAACTGAGGACTCCTCAAGGATAAGTTGGTTTATGGGAACTGTTTCTTCTGTTCAGGTTGCTGATCCAAGATGGCCTGACTCTCCTTGGAGACTTCTCCAGGTAACATGGGATGAACCAGAGTTACTTCAAAATGTGAAAAGGGTGAGCCCATGGCTGGTTGAAATTGTATCAAACATGCCTACCATTCATCTTTCCCCATTCACACCACCACGCAAGAAATTGAGATTACCTCAACCCCCAGATTTTCCCCTTGAAGGTCACCAAATTCCAGTGCCAATGTTTCCTAGCAGCAACCTTCTTGTTCCAAGCAATCCCTTTGGTCGTTTACTTGAAAGTAGTCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTATGGTATATCCTTATCGGATCTCCATCTCAATAAACTCCAGTCAGGTCTATTTTCAGCTACTTACCCACCCTTTGATCACACTCCTACTACACCAATGAGGGCCCCCAATAACAACAATAACTACTCAGCATTGCAAAAGCCAAGCACTAGTGAGAATAATGTCTCTTGCTTTCTATCCATGGCAAGTCCTACTACTCAAACTTCAAAGAAACTTGATTGTGATGTGAAGCCACCCCAGTTGGTGCTTTTTGGCCAAACAATTCTCACAGAGCAACAGATCTCTCTGAACAACTCTGTTGACACAGTGTCCAATGGAAATAATGCTGATAATAATAATAAAATGACCAAGTTTTCTGATGGTTCCAAATGCATTGCTCAAAAATGCTTCCAAGAAAATGTGGCTAGTTTGGAAAAGACAGGTCACTGTAAAGTTTTTATGGAATCAGAAGATGTAGGTCGGACTATGGACCTCTCATTGCTTGGGTCCTACGATGAACTGTACAGAAAACTGGCAGATATGTTTGGCATACAAAAATCTGAGGTACTAAGTCATGTGCTTTACCGTGATATAACTGGGGCTGTCAAACACATTGGAGATGAAAATTTCAGTGACTTCACTAAAACAGCAAGGAGGTTGACCATTCTAATGGATTCAAGCAATGAAAAAGGAGGAGAGGACTGTAGAGGAAGATAA 2148 0.4302 MLFQEFAVKKSFCLAPSDMKACMESKEEKLKEVVDKCLDSQLWHACAGGMVQMPAVNAKVFYFPQGHAEHACEPVDFRAYYKIPPFVQCRVAAIKYMADNETDEVYAKLRLVPLLSNDADFEDDGGVGGINGSETKDKLPSFAKTLTQSDANNGGGFSVPRYCAETIFPRLNYSDDPPVQNIFAKDVHGEIWKFRHIYRGTPRRHLLTTGWSSFVNNKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGGGPDPSSGWNPAGGIHSVPYGGFSGFLGEEDNQHLRNGHGNGLSTSTTLMGRGKVRAQAVIEATTLASNMQPFEVVYYPRASTPEFCVKSSLVRTAMQIRWCPGMRFKMPFETEDSSRISWFMGTVSSVQVADPRWPDSPWRLLQVTWDEPELLQNVKRVSPWLVEIVSNMPTIHLSPFTPPRKKLRLPQPPDFPLEGHQIPVPMFPSSNLLVPSNPFGRLLESSPAGMQGARHAHYGISLSDLHLNKLQSGLFSATYPPFDHTPTTPMRAPNNNNNYSALQKPSTSENNVSCFLSMASPTTQTSKKLDCDVKPPQLVLFGQTILTEQQISLNNSVDTVSNGNNADNNNKMTKFSDGSKCIAQKCFQENVASLEKTGHCKVFMESEDVGRTMDLSLLGSYDELYRKLADMFGIQKSEVLSHVLYRDITGAVKHIGDENFSDFTKTARRLTILMDSSNEKGGEDCRGR. 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04631 715 ProSiteProfiles B3 DNA-binding domain profile. 142 244 IPR003340 GO:0003677
Seca2g04631 715 Gene3D - 349 421 - -
Seca2g04631 715 Gene3D - 620 707 - -
Seca2g04631 715 ProSiteProfiles PB1 domain profile. 624 707 IPR000270 GO:0005515
Seca2g04631 715 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 36 702 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca2g04631 715 SMART B3_2 142 244 IPR003340 GO:0003677
Seca2g04631 715 Pfam Auxin response factor 311 393 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca2g04631 715 FunFam Auxin response factor 140 244 - -
Seca2g04631 715 Gene3D - 140 244 IPR015300 -
Seca2g04631 715 FunFam Auxin response factor 349 421 - -
Seca2g04631 715 Pfam B3 DNA binding domain 142 243 IPR003340 GO:0003677
Seca2g04631 715 SUPERFAMILY DNA-binding pseudobarrel domain 137 244 IPR015300 -
Seca2g04631 715 CDD B3_DNA 140 242 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04631 Seca-Chr2 132348420 132351562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04631 30 706 B3 DNA Binding Superfamily AT4G30080 58.009 0.0 743
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca2g04631 B3 9.5e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04631 - - gmx:100791442 1007.28