Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04626 ATGGCAAAAGACATTGAAACTGCTGCACAAGGTGGGTTACCGCACAAGGACTACCACGACCCACCGCCAGCACCACTCTTCGACTCCACCGAACTCGGCAAGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCGTCGCCACTCTGCTCTTCCTCTACATCACCGTCTTAACCGTCATTGGCTACAAAAGCCAAACGGATCCCACCTCTCCCGGTTACGGCGGCGACGCTTGCAGCGGCGTTGGCATCCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCATCCTCGTCTACTGCACCGCCGGAATCTCTGGGGGTCACATAAACCCTGCGGTGACGTTTGGGTTGTTCCTGGCTCGTAAGGTGTCGTTGATTAGAGCTATAATGTATATGGTGGCTCAGTGTTTGGGTGCTATATGTGGTGTTGGGCTTGTGAAGGCTTTTCAGAGTAGCTATTACAATAGGTACAAAGGTGGTGCTAACATGCTTGCGGATGGCTACAACAAAGGCACTGGTTTAGGTGCTGAGATTATTGGAACCTTTGTTCTTGTCTACACCGTCTTCTCTGCTACCGATCCCAAGAGAAACGCCAGAGATTCTCATGTTCCCGTTTTGGCACCACTTCCAATTGGGTTTGCAGTGTTCATGGTTCACCTTGCCACCATCCCTATCACCGGAACCGGTATCAACCCTGCTAGGAGTCTCGGTGCTGCTGTGATTTTCAATGACGAGAAAGCATGGGATGACCAGTGGATTTTCTGGGTTGGACCTTTCATTGGTGCTGCTATTGCTGCAATTTATCACCAGTATGTGTTGAGAGCTCAAGCGGCGAAGGCTTTGGGTTCTTTCAGGAGCTCCTCAAACCTGTAA 873 0.5155 MAKDIETAAQGGLPHKDYHDPPPAPLFDSTELGKWSFYRALIAEFVATLLFLYITVLTVIGYKSQTDPTSPGYGGDACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQSSYYNRYKGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNDEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSSNL. 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04626 290 SUPERFAMILY Aquaporin-like 32 274 IPR023271 -
Seca2g04626 290 Gene3D Glycerol uptake facilitator protein. 24 290 IPR023271 -
Seca2g04626 290 Pfam Major intrinsic protein 32 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04626 290 PRINTS Major intrinsic protein family signature 176 194 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04626 290 PRINTS Major intrinsic protein family signature 127 146 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04626 290 PRINTS Major intrinsic protein family signature 90 114 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04626 290 PRINTS Major intrinsic protein family signature 252 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04626 290 PRINTS Major intrinsic protein family signature 212 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04626 290 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04626 290 FunFam Probable aquaporin PIP1-2 24 288 - -
Seca2g04626 290 ProSitePatterns MIP family signature. 108 116 IPR022357 -
Seca2g04626 290 NCBIfam MIP family channel protein 43 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04626 290 CDD MIP 39 272 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca2g04626 290 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 4 284 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04626 Seca-Chr2 132285344 132287489 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04626 1 290 Major Intrinsic Protein MIP AT2G37170 82.069 4.25e-174 482
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04626 K09872 - cave:132192267 511.916
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04626 2 132285344 132287489 Seca8g07097 8 167060162 167063319 ECH
Seca2g04626 2 132285344 132287489 Seca2g04626 2 132285344 132287489 ECH
Seca2g04701 2 133163096 133164731 Seca2g04626 2 132285344 132287489 ECH
Seca2g04626 2 132285344 132287489 Seca4g04094 4 72792011 72793793 ECH