Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g04626 | ATGGCAAAAGACATTGAAACTGCTGCACAAGGTGGGTTACCGCACAAGGACTACCACGACCCACCGCCAGCACCACTCTTCGACTCCACCGAACTCGGCAAGTGGTCCTTCTACAGAGCCCTCATCGCCGAGTTCGTCGCCACTCTGCTCTTCCTCTACATCACCGTCTTAACCGTCATTGGCTACAAAAGCCAAACGGATCCCACCTCTCCCGGTTACGGCGGCGACGCTTGCAGCGGCGTTGGCATCCTCGGCATCGCTTGGGCCTTCGGCGGCATGATTTTCATCCTCGTCTACTGCACCGCCGGAATCTCTGGGGGTCACATAAACCCTGCGGTGACGTTTGGGTTGTTCCTGGCTCGTAAGGTGTCGTTGATTAGAGCTATAATGTATATGGTGGCTCAGTGTTTGGGTGCTATATGTGGTGTTGGGCTTGTGAAGGCTTTTCAGAGTAGCTATTACAATAGGTACAAAGGTGGTGCTAACATGCTTGCGGATGGCTACAACAAAGGCACTGGTTTAGGTGCTGAGATTATTGGAACCTTTGTTCTTGTCTACACCGTCTTCTCTGCTACCGATCCCAAGAGAAACGCCAGAGATTCTCATGTTCCCGTTTTGGCACCACTTCCAATTGGGTTTGCAGTGTTCATGGTTCACCTTGCCACCATCCCTATCACCGGAACCGGTATCAACCCTGCTAGGAGTCTCGGTGCTGCTGTGATTTTCAATGACGAGAAAGCATGGGATGACCAGTGGATTTTCTGGGTTGGACCTTTCATTGGTGCTGCTATTGCTGCAATTTATCACCAGTATGTGTTGAGAGCTCAAGCGGCGAAGGCTTTGGGTTCTTTCAGGAGCTCCTCAAACCTGTAA | 873 | 0.5155 | MAKDIETAAQGGLPHKDYHDPPPAPLFDSTELGKWSFYRALIAEFVATLLFLYITVLTVIGYKSQTDPTSPGYGGDACSGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAIMYMVAQCLGAICGVGLVKAFQSSYYNRYKGGANMLADGYNKGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSLGAAVIFNDEKAWDDQWIFWVGPFIGAAIAAIYHQYVLRAQAAKALGSFRSSSNL. | 291 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g04626 | 290 | SUPERFAMILY | Aquaporin-like | 32 | 274 | IPR023271 | - | |
Seca2g04626 | 290 | Gene3D | Glycerol uptake facilitator protein. | 24 | 290 | IPR023271 | - | |
Seca2g04626 | 290 | Pfam | Major intrinsic protein | 32 | 269 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Seca2g04626 | 290 | PRINTS | Major intrinsic protein family signature | 176 | 194 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Seca2g04626 | 290 | PRINTS | Major intrinsic protein family signature | 127 | 146 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Seca2g04626 | 290 | PRINTS | Major intrinsic protein family signature | 90 | 114 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Seca2g04626 | 290 | PRINTS | Major intrinsic protein family signature | 252 | 272 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Seca2g04626 | 290 | PRINTS | Major intrinsic protein family signature | 212 | 234 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Seca2g04626 | 290 | PRINTS | Major intrinsic protein family signature | 39 | 58 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Seca2g04626 | 290 | FunFam | Probable aquaporin PIP1-2 | 24 | 288 | - | - | |
Seca2g04626 | 290 | ProSitePatterns | MIP family signature. | 108 | 116 | IPR022357 | - | |
Seca2g04626 | 290 | NCBIfam | MIP family channel protein | 43 | 268 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Seca2g04626 | 290 | CDD | MIP | 39 | 272 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Seca2g04626 | 290 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 4 | 284 | IPR034294 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g04626 | Seca-Chr2 | 132285344 | 132287489 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g04626 | 1 | 290 | Major Intrinsic Protein MIP | AT2G37170 | 82.069 | 4.25e-174 | 482 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g04626 | K09872 | - | cave:132192267 | 511.916 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Seca2g04626 | 2 | 132285344 | 132287489 | Seca8g07097 | 8 | 167060162 | 167063319 | ECH | |
Seca2g04626 | 2 | 132285344 | 132287489 | Seca2g04626 | 2 | 132285344 | 132287489 | ECH | |
Seca2g04701 | 2 | 133163096 | 133164731 | Seca2g04626 | 2 | 132285344 | 132287489 | ECH | |
Seca2g04626 | 2 | 132285344 | 132287489 | Seca4g04094 | 4 | 72792011 | 72793793 | ECH |