Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04625 ATGATTCTATTTTATGGACTTTGGTTGATAGGTTCAGAGCAAAACAGGATGAGATTCAGCTGGGAAATACGGAGGGACGTGTGCATAGGTGTGGCGAGGGTGCTTGCCTTTCTCCATGAGGAACTTAAACCTCATATTGTGCATAGGGATATCAAAGCCAGCAATATCCTTCTTGATCGAAATTTGACACCAAAAGTTTCAGACTTTGGTTTGGCAAAGCTACTAAGAGATGAAAAATCCCACATCACCACTCGAGTTGCAGGGACATTTGGTTATCTTGCTCCAGAGTATGCCAGTTCTGGACAGGTGTCACGAAAATCAGATGTTTATAGCTTTGGAGTATTACTCTTAGAAATTGTGAATGGCGAAGCAGTGGTAGATTCTCATCAACCTATGGAACAACGTTTCATAGTAGAAAAGGCTTGGGCAGCGTATGAAGCTAATGATGTTTTGAGAATGGTGGATAAGGTGCTGAATCAGAACTTTCCCGTGGAAGAAGCGAAACGGTTCCTAACGGTGGGGTTGCGTTGCGTGCAAGAAACCGCCAAGCATAGGCCACGTATGTCAGAGGTTGTGGAGATGTTGACCAACAAGATTGAGATGGAAGAGGTTCCTATTTCAAAACCAGGATTTATCAGTGATTTGAGGAGACTGAGAAGAGACGAGAAGCAAACGCATTCATTAGAAGAATCAAGTTTTAGTGGAGCAACCTATGCAAGCTCCATGTGGAGTTCAGCTAATCTTGCCCGTTAG 753 0.4356 MILFYGLWLIGSEQNRMRFSWEIRRDVCIGVARVLAFLHEELKPHIVHRDIKASNILLDRNLTPKVSDFGLAKLLRDEKSHITTRVAGTFGYLAPEYASSGQVSRKSDVYSFGVLLLEIVNGEAVVDSHQPMEQRFIVEKAWAAYEANDVLRMVDKVLNQNFPVEEAKRFLTVGLRCVQETAKHRPRMSEVVEMLTNKIEMEEVPISKPGFISDLRRLRRDEKQTHSLEESSFSGATYASSMWSSANLAR. 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04625 250 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 14 245 - -
Seca2g04625 250 SMART serkin_6 1 195 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04625 250 SUPERFAMILY Protein kinase-like (PK-like) 14 213 IPR011009 -
Seca2g04625 250 ProSitePatterns Serine/Threonine protein kinases active-site signature. 46 58 IPR008271 GO:0004672|GO:0006468
Seca2g04625 250 Gene3D Transferase(Phosphotransferase) domain 1 7 208 - -
Seca2g04625 250 ProSiteProfiles Protein kinase domain profile. 1 199 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04625 250 FunFam Putative LRR receptor-like serine/threonine-protein kinase 6 207 - -
Seca2g04625 250 Pfam Protein kinase domain 15 193 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04625 Seca-Chr2 132267891 132270116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04625 17 214 Receptor kinase-like Gene Family AT1G56120 47.980 4.97e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca2g04625 Pkinase 7.9e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04625 - - gmx:100813945 347.051