Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04623 ATGGGCAACATTTCAAGCAACGGCGGCGGTAATAACCGTCGCCGACACAGTCACGGTTCAAGACGGAGTCACCCGCCGCCGCCACCTCCGGTGACGCCACAGCCAGAAATCGCGGGTAATCCATTTGTGTACCCTGGTGCTGCACCGTACCCGAACCCTCCCCTGCATTACCCTCAGTACCATTACCCTGGTTACTATCCACCCGTTCCTAATCCTATGCCTCATCATCATCACCATCACCACCACCATCATCATCCACACATGGAGCCAGATTGGGTTCCTCGGTTCTACCCTTGTGGACCTGTTATGCCTCAACCTGCACCTTTCGTTGAGCATCAGAAAGCCGTTACCATAAGGAACGATGTCAATATCAAGAAGGAGACTCTTATGATTGAACCCGATGAGGCTAACCCTGGCTTCTTCCTTGTCTCTTTTACATTTGATGCCACCGTTTCTGGGAGTTTAGTGCTTTTGAATGCTAATTTCCATTTGTGTGGAGGGTTTTGTCATCCAATCATAATGATGATTATGACTATGGATGTGGACATTTTGTACTATAGTTCTTCATTTACTGGTTCTGAAGGTTTTATTTCCTTTTTTCCTTTTAACAGCATCACCATACTTTTCTTTGCAAAAGAAGGTGAAGGCTGCATCCTTACTCCAATGAAGGAAAACCCTGTTGCACCAGTGACTATACAATTCGAGCAAGGTCTTGGCCAGAAGTTTAGACAACCACCTGGAACTGGTATTGATTTTTCAATGTTTGAGGAGTCAGAGTTATTGAAAGTGGGTGACATAGATGTCTACCCTCTAGCAGTGAAGGCAGATGCTTCCCCTTGTAATCATGATGGACCAGGTGAAACTCCAACATCTGGTAACACAAACTCTCAGATAACTCAAGCGGTTTTTGAGAAGGAGAAAGGAGAATTCCGGGTGAAAGTTATTAAACAGATCTTATGGGTGAATGGAATGAGGTATGAGCTGCAGGAGATATATGGTATTGGAAATTCAGTGGAGAGTGACTTGGAGGAGAATGACCAAGGAAAAGAGTGTGTCATCTGCTTGTTAGAGCCTAGTGACACAATTGTCCATCCCTGCCGACATATGTGCATGTGCAGTGGATGCGCAAAGGTTCTGAGGTTCCAGACAAATAAATGTCCAATTTGCAGACAACCAATTGAGAGGCTTTTGGAGATAAAGGTAGGGCCTGAGGAGTGA 1218 0.4557 MGNISSNGGGNNRRRHSHGSRRSHPPPPPPVTPQPEIAGNPFVYPGAAPYPNPPLHYPQYHYPGYYPPVPNPMPHHHHHHHHHHHPHMEPDWVPRFYPCGPVMPQPAPFVEHQKAVTIRNDVNIKKETLMIEPDEANPGFFLVSFTFDATVSGSLVLLNANFHLCGGFCHPIIMMIMTMDVDILYYSSSFTGSEGFISFFPFNSITILFFAKEGEGCILTPMKENPVAPVTIQFEQGLGQKFRQPPGTGIDFSMFEESELLKVGDIDVYPLAVKADASPCNHDGPGETPTSGNTNSQITQAVFEKEKGEFRVKVIKQILWVNGMRYELQEIYGIGNSVESDLEENDQGKECVICLLEPSDTIVHPCRHMCMCSGCAKVLRFQTNKCPICRQPIERLLEIKVGPEE. 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04623 405 ProSiteProfiles Zinc finger RING-type profile. 351 390 IPR001841 -
Seca2g04623 405 Pfam Zinc finger, C3HC4 type (RING finger) 349 395 - -
Seca2g04623 405 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 334 400 IPR013083 -
Seca2g04623 405 FunFam probable E3 ubiquitin-protein ligase LOG2 335 400 - -
Seca2g04623 405 PANTHER MAHOGUNIN 1 400 IPR045194 GO:0061630
Seca2g04623 405 CDD mRING-HC-C3HC5_MGRN1-like 349 390 IPR045195 -
Seca2g04623 405 MobiDBLite consensus disorder prediction 1 44 - -
Seca2g04623 405 SUPERFAMILY RING/U-box 350 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04623 Seca-Chr2 132236880 132240713 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04623 92 370 C3H Transcription Factor Family AT3G09770 50.694 5.74e-88 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04623 - - aprc:113862864 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04623 2 132236880 132240713 Seca2g04623 2 132236880 132240713 ECH
Seca8g05395 8 144948153 144954060 Seca2g04623 2 132236880 132240713 PCT