Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04621 ATGGCAACTGAAGCACAAGCCTTTCCCAACAACAACAACAATAATAATGACCAAGGCACTCATAACTCAATTCAAGAGGATGTAGAGTCATCTGAAATAACTGAAGTCCCTAGTAGACAACATGGGAGAAGGAAAAACCTTATCTTGGAGATACCCTCAAGAACACTGGATGAAGCAAGAGAGGATTTTTTGGGAACAAACAAGCCTCCAACTCCACCTCCCAGAAGACTGAATTTTTACCCCTCTACAAGCCCTCATTTATCCGGAATCAATGAGTTCCATGGTTCTTCATCTACAAAAAATAAATCAACTATTAAAACACCTACTCCCAAACCCAATTTTAAATTCCACAACATGAGTTCAGATATTGAAACTTCCACCCTAGCACTTGAAGGTTCACCCCCAGAGCCACCAAAAAAGTCTATGATTTCAAGAACATTATCTTTTACAAAGGTGATCACACCTAGAGGGAAGATTACATCATCCTTACCTATAACCCCAAATGCTCAGTCAAATCTGGAGTCTCAACATGGAGGGAACACTGCCTATCTAGCAACACCTGTTAAAAAAGGACAGCAATTACCAATACATCGTTCTCATTCAGTTCCTGTGTTTACCAAATATGACAACACATCTGCAGGTGGCATGTTTCGTGTTGTTCCTACCACACCACGGTTGGCTGGGAGTATTGCCACAGCATCTGCGAAATCTCCACCTGACGATACTGTTGAAAGTGAGGATGGAGAAGATATCCCTGAAGAAGAAGCTGTCTGCAGAATTTGTTTGATTGAATTAGGAGAAGGTTCTGATACCCTTAAAATGGAGTGCAGCTGCAAAGGTGAACTTGCACTGGCACACCAAGAGTGTGCAGTTAAATGGTTTAGCATTAAAGGCAATAGAACATGTGATGTGTGCAAGCAGGAAGTTCAGAACCTACCTGTCACTCTTTTGCGAGTTCCAGGTGACTTCATAAGGAGCAGAGTTCATCAATACAGGCAAGGGCAAATCACTGCTTTTCTTGAGTATTTGTTATGCTGA 1038 0.4171 MATEAQAFPNNNNNNNDQGTHNSIQEDVESSEITEVPSRQHGRRKNLILEIPSRTLDEAREDFLGTNKPPTPPPRRLNFYPSTSPHLSGINEFHGSSSTKNKSTIKTPTPKPNFKFHNMSSDIETSTLALEGSPPEPPKKSMISRTLSFTKVITPRGKITSSLPITPNAQSNLESQHGGNTAYLATPVKKGQQLPIHRSHSVPVFTKYDNTSAGGMFRVVPTTPRLAGSIATASAKSPPDDTVESEDGEDIPEEEAVCRICLIELGEGSDTLKMECSCKGELALAHQECAVKWFSIKGNRTCDVCKQEVQNLPVTLLRVPGDFIRSRVHQYRQGQITAFLEYLLC. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04621 345 MobiDBLite consensus disorder prediction 1 53 - -
Seca2g04621 345 ProSiteProfiles Zinc finger RING-CH-type profile. 250 312 IPR011016 GO:0008270
Seca2g04621 345 MobiDBLite consensus disorder prediction 1 31 - -
Seca2g04621 345 PANTHER OS02G0165000 PROTEIN 9 324 - -
Seca2g04621 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 313 IPR013083 -
Seca2g04621 345 CDD RING_CH-C4HC3_MARCH 258 306 - -
Seca2g04621 345 MobiDBLite consensus disorder prediction 32 53 - -
Seca2g04621 345 Pfam RING-variant domain 258 305 IPR011016 GO:0008270
Seca2g04621 345 SMART ringv_2 257 306 IPR011016 GO:0008270
Seca2g04621 345 MobiDBLite consensus disorder prediction 93 116 - -
Seca2g04621 345 SUPERFAMILY RING/U-box 254 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04621 Seca-Chr2 132223851 132227899 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04621 171 312 C3H Transcription Factor Family AT2G37950 28.276 2.86e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04621 - - gmx:100783117 405.986
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04621 2 132223851 132227899 Seca2g04621 2 132223851 132227899 ECH