Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04615 ATGCTTAATCTCGTCGGTTTCTCGTTGTTGAATATGGACTCTGTGGCGTACAGGGGGTTTCTCTACACATTCTTCATTCTCCTTCAACCTCTCGTTTCTGCTTCAGGTGGAAAATCTGGAAATGCTGCTGATTTGTTTGAGAGGGCATCACAAAGTATAAAAGTGAAACATTATACTGAGGCACTCGATGATCTAAATGCTGCTATAGAAGCAGATCCAACCCTTTCCGAAGCATACCTTTTCCGTGCCTCAGTTCTTCGTCAGTTATGCAGATATGAGCTATCTGAGAGGAGCTACAAAAAGTTTCTGGAGTTAAAACCTGGAGATTCAGCTGCAGAAAAGGAGCTCTCTCAACTGTTGCAGGCTCGAAGTTCCCTAGAAACAGCTCAGTCCCTCTATGATTTGGGCAACTTCACAAAATCCTTGGAATATATTGACAAAGTTGTGCTTGTTTTTTCTCCAGCTTGCACTAAGGCTAAGCTTCTTAAAGTAAAGTTGTTGATAGCTGACAAAGAGTATGAGGGCGCCATTGCAGAGTCTGGGTATATTCTCAAGGAAGATGAAAATAATTTAGAGGCATTACTGTTACGTGGTCGTGCATATTACTATTTAGCTGATCATGATGTTGCAACAAGGCATTTCCAAAAAGGTCTTCGCCTAGATCCAGAACACAGTGAACTAAAAAAAACATATTTTGGATTGAAAAATCTACTAAAAAAGAGTAAAGCTGCTGAAGATAATGCGGATAAGGGTAAGCTAAGGGTGGCGGTGGAGGACTTCAAAAGTGCACTTGCTGTTGACCCCAATCATCTTGCACATAATGTACATCTTTATCTTGGCTTATGTAAAGTGCAAGTCAGGCTAGGCAGAGGAAAAGATGCCTTGAACAGTTGTAGTGAAGCTCTTAAGATCAATGAGGAGCTAGTTGAAGCTCTTGTTCAGAGGGGAGAAGCCAAACTCTTGACAGAGGATTGGGAGGGAGCTGTGGAGGATCTGAAATCAGCTGCTCAACAATCTCCTCAGGATATGAATATCCGTGAAACGTTGATGAGGGCTGAAAAAGCTTTAAAGATGAGCAAACGCAAGGATTTCTACAAGATTTTGGGAATTTCAAAAACTGCTTCTGCCGCTGAGATAAAACGTGCCTACAAGAAACTTGCCTTACAATGGCACCCAGATAAGAATGTTGACAAGAGGGAAGAAGCAGAGGCTCAATTCCGAGAAATTGCTGCTGCATATGAGGTCTTGTTTACAAATAAATGTGCCCTTTTACTTCAGTCCTTAATCAGGGGACATAATTGTGTGATTGTTGGATATATTTATCATGCTCACACAATCTTTTTTTGCTTGAGTTACAGATATTTTCCACTACATAAAAGAAATCTGGGATGTGAATATTTTGTGGAATAA 1410 0.4078 MLNLVGFSLLNMDSVAYRGFLYTFFILLQPLVSASGGKSGNAADLFERASQSIKVKHYTEALDDLNAAIEADPTLSEAYLFRASVLRQLCRYELSERSYKKFLELKPGDSAAEKELSQLLQARSSLETAQSLYDLGNFTKSLEYIDKVVLVFSPACTKAKLLKVKLLIADKEYEGAIAESGYILKEDENNLEALLLRGRAYYYLADHDVATRHFQKGLRLDPEHSELKKTYFGLKNLLKKSKAAEDNADKGKLRVAVEDFKSALAVDPNHLAHNVHLYLGLCKVQVRLGRGKDALNSCSEALKINEELVEALVQRGEAKLLTEDWEGAVEDLKSAAQQSPQDMNIRETLMRAEKALKMSKRKDFYKILGISKTASAAEIKRAYKKLALQWHPDKNVDKREEAEAQFREIAAAYEVLFTNKCALLLQSLIRGHNCVIVGYIYHAHTIFFCLSYRYFPLHKRNLGCEYFVE. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04615 469 ProSiteProfiles TPR repeat profile. 191 224 IPR019734 GO:0005515
Seca2g04615 469 Pfam Tetratricopeptide repeat 192 224 IPR013105 -
Seca2g04615 469 Pfam Tetratricopeptide repeat 56 110 - -
Seca2g04615 469 CDD DnaJ 363 416 IPR001623 -
Seca2g04615 469 Coils Coil 234 254 - -
Seca2g04615 469 PANTHER DNAJ PROTEIN P58IPK HOMOLOG 21 416 IPR044620 -
Seca2g04615 469 ProSiteProfiles dnaJ domain profile. 363 421 IPR001623 -
Seca2g04615 469 Gene3D Tetratricopeptide repeat domain 34 358 IPR011990 GO:0005515
Seca2g04615 469 Pfam DnaJ domain 363 418 IPR001623 -
Seca2g04615 469 SUPERFAMILY Chaperone J-domain 330 417 IPR036869 -
Seca2g04615 469 PRINTS DnaJ domain signature 401 421 IPR001623 -
Seca2g04615 469 PRINTS DnaJ domain signature 365 383 IPR001623 -
Seca2g04615 469 PRINTS DnaJ domain signature 383 398 IPR001623 -
Seca2g04615 469 SMART dnaj_3 362 421 IPR001623 -
Seca2g04615 469 SUPERFAMILY TPR-like 47 358 IPR011990 GO:0005515
Seca2g04615 469 Gene3D DnaJ domain 359 422 IPR036869 -
Seca2g04615 469 FunFam DnaJ domain containing protein 29 360 - -
Seca2g04615 469 SMART tpr_5 275 308 IPR019734 GO:0005515
Seca2g04615 469 SMART tpr_5 42 75 IPR019734 GO:0005515
Seca2g04615 469 SMART tpr_5 76 109 IPR019734 GO:0005515
Seca2g04615 469 SMART tpr_5 309 342 IPR019734 GO:0005515
Seca2g04615 469 SMART tpr_5 122 155 IPR019734 GO:0005515
Seca2g04615 469 SMART tpr_5 237 270 IPR019734 GO:0005515
Seca2g04615 469 SMART tpr_5 191 224 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04615 Seca-Chr2 132192038 132197572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04615 359 416 C2H2 Transcription Factor Family AT1G74250 48.387 1.75e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04615 K09523 - gmx:100804685 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04615 2 132192038 132197572 Seca2g04615 2 132192038 132197572 ECH