Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04614 ATGCAAATGATGCCCGGTGACCCCTTTTCCATTGGAGGAACAACTTCCAAAGAGCAAAACACAAACCCTAACCCTAATCCCCCTCCACCTTCCAAGAAGAAGAGAAATCTACCAGGAACACCAGATCCAGATGCTGAGGTTATTGCTCTTTCACCAAAGACTCTCATGGCCACCAACCGTTTCATCTGTGAGATATGCAACAAAGGTTTCCAGAGGGATCAGAACCTTCAACTTCACAGAAGAGGACACAACCTTCCATGGAAGCTGCGTCAGAGGTCCAACAAAGAGACTAAGAAGAAGGTATACATCTGCCCGGAGAAGACCTGTGTCCACCATGACGCCGCCAGGGCACTCGGCGACCTCACCGGAATAAAGAAGCATTATAGTAGAAAACATGGAGAGAAGAAGTGGAAGTGTGAGAAATGTTCCAAGAAATATGCAGTACAATCTGATTGGAAAGCTCACACCAAAACTTGTGGCACTAGAGAATATAAGTGTGATTGTGGCACCCTCTTCTCCAGGAAGGACAGTTTTATTACCCACAGAGCATTTTGTGATGCTTTAGCTGAAGAGAGTGCTAGACTTACTTCAGTTGCTACCACCAATACTCTAAATTTTAAGAATGAAGAGGCAAGTTTGATGAACACAGTACAATCTAGTTTGGCACATGGATTAATAGCTGGTCATGGTCAGGGACTTCAAAATGTTGTTGGGGTTTCTCCACAGTTTGGTCCACATGGATTTCATGTAGATTTTAATGGAATTGGTATGTGTGGAGAGCAGCAAAGGCCAAACTTGTCATTATGGTTGAACCAAGGAAATCAACAGATGAATAGTACTAGTACTACTAATCTACTTGATCATGAGGTTGTGCAGCAAATGACACAAGCTAATAATGCTTTAATTGGTTCTTCTTCTAATTTTGGAATGTCTGCTTCCAATTCATGTACCTTACCATTGGGGAAAAAAGCAGAATGTGGAACTTATTCAGAACATTTATCAGCTTCTCCAATGTCAGCTACTGCCCTTCTGCAGAAAGCAGCACAAATGGGTTCAACAAGAAGTGACAATAACTCTTCCATTTTCAGTGGCAGTTTTGGAGTAATGACCTCATCATCTTCCACTACCAATGCTAATAACCAAAACTGTGAAGAGCTTAACCGTGCATTTCAGAATATGAACCAACCACAGAATTTTAATCCAACTACTAGCTTTGGTTCATTTCCACATAATTCATCACATGGTTTTGATCATCCAATGAAGTTTCATCATGGTTCAAATAGAGTGGAACATAATAATAACTTGACAAGAGATTTTCTTGGTATGAGTGGAGGAGGAGGAGTTGGCCATCCATTCCTACCACAAGAGCTGGCAAAGTTTGCTTCCATTGGTTCATCCATGAGTTTGAACCAATTTACTGCAAGCCATCAATGA 1434 0.4156 MQMMPGDPFSIGGTTSKEQNTNPNPNPPPPSKKKRNLPGTPDPDAEVIALSPKTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKETKKKVYICPEKTCVHHDAARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALAEESARLTSVATTNTLNFKNEEASLMNTVQSSLAHGLIAGHGQGLQNVVGVSPQFGPHGFHVDFNGIGMCGEQQRPNLSLWLNQGNQQMNSTSTTNLLDHEVVQQMTQANNALIGSSSNFGMSASNSCTLPLGKKAECGTYSEHLSASPMSATALLQKAAQMGSTRSDNNSSIFSGSFGVMTSSSSTTNANNQNCEELNRAFQNMNQPQNFNPTTSFGSFPHNSSHGFDHPMKFHHGSNRVEHNNNLTRDFLGMSGGGGVGHPFLPQELAKFASIGSSMSLNQFTASHQ. 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04614 477 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Seca2g04614 477 Gene3D Classic Zinc Finger 39 115 - -
Seca2g04614 477 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Seca2g04614 477 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 455 IPR031140 -
Seca2g04614 477 FunFam protein indeterminate-domain 12-like 40 108 - -
Seca2g04614 477 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Seca2g04614 477 SMART c2h2final6 102 132 IPR013087 -
Seca2g04614 477 SMART c2h2final6 137 157 IPR013087 -
Seca2g04614 477 SMART c2h2final6 61 83 IPR013087 -
Seca2g04614 477 Gene3D Classic Zinc Finger 116 194 - -
Seca2g04614 477 Pfam Zinc-finger double-stranded RNA-binding 61 83 IPR022755 -
Seca2g04614 477 MobiDBLite consensus disorder prediction 1 46 - -
Seca2g04614 477 MobiDBLite consensus disorder prediction 22 36 - -
Seca2g04614 477 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04614 Seca-Chr2 132155062 132158360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04614 1 464 IDZ Gene Family AT5G03150 49.423 1.35e-131 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g04614 zf-C2H2_jaz 6.9e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04614 K25870 - gmx:100812495 592.423