Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04613 ATGGGAGCTCCCAACTTTTCATTTTTAACAGGCAAAGCTTTGTTTGGTGAGGATGAATGGTATTTCTTTACACCTAGGGACAGGAAGTATCCTAATGGAGTGAGGCCTAATAGAGCAGCTGGTTCAGGTTATTGGAAGGCTACTGGGACTGACAAACCTATTCTTACTTCATGTGGGATGAAGAGCATTGGAGTGAAGAAGGCCCTTGTGTTTTACAAGGGACGTCCACCAAAAGGATCTAAATCTGATTGGATCATGCATGAGTATAGGTTGCATGATACAATGATCTCTATTTCCAAACAAAGAGGGTCTATGAGATTGGATGAGTGGGTGTTATGCAGAGTTCGACAGAAAGTTAGCAGCCCAAGAAGTAATTGGGAAGATTCAAATGAAGTTAGTTATGAACCAACAAGCCAAATTCAACAAATGAATGAGAACTCTAATCCTGAACCAGTGAAAAACTCTGTGCAGAATGAATATCCAATGTTACCTTATATTTTGGCTTCTAAGAGTACTCTGCCTAATTCAATTGGTATGGCCTCATGCTCAGGCTTTCATTGTAATGATGACATAAAAGCATATTCATTGCATGAAGACAACTTAGACATACTAGGAGCTCAGTTCTTAGCATCTGCATCAGAGGGCTTGTTTAATCCACTGAAGAGAAAAGCAATTGAAGAAAATAGCTTGGATTTTTATGCTCCCACCAATCAAAAGCTAAGCAGAGAAGTTGATGATGGGAATCAAAGGGTTGAGATAGAAGTAAGCAAAGGCTATAATTTCAACAACTTTGACCAGTGGACTTCAATCATACAACCTCAAGAGCTTAATAGCTTAGCCTTTACGGGATATACAAGAGTAGTTTAG 867 0.3933 MGAPNFSFLTGKALFGEDEWYFFTPRDRKYPNGVRPNRAAGSGYWKATGTDKPILTSCGMKSIGVKKALVFYKGRPPKGSKSDWIMHEYRLHDTMISISKQRGSMRLDEWVLCRVRQKVSSPRSNWEDSNEVSYEPTSQIQQMNENSNPEPVKNSVQNEYPMLPYILASKSTLPNSIGMASCSGFHCNDDIKAYSLHEDNLDILGAQFLASASEGLFNPLKRKAIEENSLDFYAPTNQKLSREVDDGNQRVEIEVSKGYNFNNFDQWTSIIQPQELNSLAFTGYTRVV. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04613 288 Gene3D NAC domain 6 121 IPR036093 GO:0003677|GO:0006355
Seca2g04613 288 MobiDBLite consensus disorder prediction 123 153 - -
Seca2g04613 288 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 174 - -
Seca2g04613 288 SUPERFAMILY NAC domain 9 118 IPR036093 GO:0003677|GO:0006355
Seca2g04613 288 Pfam No apical meristem (NAM) protein 11 91 IPR003441 GO:0003677|GO:0006355
Seca2g04613 288 ProSiteProfiles NAC domain profile. 1 118 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04613 Seca-Chr2 132139533 132141206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04613 9 118 NAC Transcription Factor Family AT1G69490 72.727 1.16e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca2g04613 NAM 1.4e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04613 - - gmx:100788799 452.21