Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04612 ATGAGTGTCATCGACATTCTTACCAGAGTTGATTCCATTTGTAAGAAGTATGACAAATACGACGTCGATAAGCAAAAGGATTCCAATCTCGCCGGCGATGATGCATTCGCCAAACTCTACGCCGTCGTTGACGCCGACATTGAGGCCGCGCTTCAGAAAGCAGAAACCGCTTCCAAGGAGAAAGGTAAGGCATCTGCTGTAGCGATCAATGCCGAGATTCGTCGTACAAAAGCTAGGTTGCTGGATGAGGTTCCCAAGTTGCAGAGGTTGGCTGTAAAAAAGGTAAAGGGGCTTTCATCACAAGAATTTGCAGCCCGTAATGATTTGGTTCTTGCATTGCCAGAGAGGATCCAAGCTATCCCAGATGGGACCCCTGCTGTGCCCAAACAATCTGGAGGTTGGGGATGGGGAGCTTCTGCTTCACGTCCTGAAATTAAATTTGATTCAGCAATCATAGATGGGCGATTTGACGATGAATGCTTCCAACAAACAGAAGAATCAAGTCAATTCAGACAGGAGTATGAAATGCGTAAAATGAAACAGGATCAAGGTTTGGATATGATCGCAGAAGGGTTGGATACTTTGAAAAACATGGCACACGATATGAATGAGGAACTGGATAGACAAGTTCCATTGATGGATGAGATTGATACTAAGGTGGATAAGGCATCCTCTGACCTTAAGAATACCAATGTTAGACTTAAAGATACAGTGACCCAGCTTCGATCCAGCCGAAACTTCTGTATTGATATTGTTTTGTTGATTATAATTTTGGGAATTGCTGCCTATTTGTACAAGAAGAGGAGATGA 810 0.437 MSVIDILTRVDSICKKYDKYDVDKQKDSNLAGDDAFAKLYAVVDADIEAALQKAETASKEKGKASAVAINAEIRRTKARLLDEVPKLQRLAVKKVKGLSSQEFAARNDLVLALPERIQAIPDGTPAVPKQSGGWGWGASASRPEIKFDSAIIDGRFDDECFQQTEESSQFRQEYEMRKMKQDQGLDMIAEGLDTLKNMAHDMNEELDRQVPLMDEIDTKVDKASSDLKNTNVRLKDTVTQLRSSRNFCIDIVLLIIILGIAAYLYKKRR. 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04612 269 CDD SNARE_Qc 180 235 - -
Seca2g04612 269 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Seca2g04612 269 Gene3D - 182 246 - -
Seca2g04612 269 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Seca2g04612 269 PANTHER SYNTAXIN 46 257 IPR045242 -
Seca2g04612 269 SMART tSNARE_6 170 237 IPR000727 -
Seca2g04612 269 Pfam SNARE domain 212 261 IPR000727 -
Seca2g04612 269 SUPERFAMILY SNARE fusion complex 168 235 - -
Seca2g04612 269 FunFam Putative syntaxin-71-like 175 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04612 Seca-Chr2 132134996 132141582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04612 1 265 SNARE and Associated Proteins AT3G09740 76.226 1.32e-151 422
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04612 K08506 - gmx:100819272 432.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04612 2 132134996 132141582 Seca2g04612 2 132134996 132141582 ECH