Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04609 ATGGGACATAGACACTTATATAACACATCTCCATTGTTTGAGGGTGAGGCTGACCAGAATTGGAATCATATGCATACTGATCAACATTATGTGAACCTTGGTAGGAATAGCACTTCAGAGAATGGTTCTTTTATTTATCCAGTGGAAAATATGGCTATAGATAACATATCTTTCCCTTCTCATTGGAACTCCACCACAAGGTCAAGCGGATATGCATCCTCAAGTCTCAACATTGAAGTGCCTCCTCATCAATCAGATGCATCAGGCACTTCTAATGATCATTTTATGCATTCATCTAGTGCTGGAGCGTTTTTTGCAGTGTCTGAAAATTATGTACACCAGCCTTCTTCATCTAATTATGACAGACAAGCATTCCATGTTGATGGTGGTTTTATTGATCTTACAATGGGAAGTGGACGAGGGCCTCACAAGCGGAAGAGCCCTGGAATTCCTTCAGTCTATGAGAGAGGCAGTACAAGCAGATATTTCAGTGCTGGGAGTTCAACTGATCTTCCCATGTCTTCAGAATCACGGCCAGAGAAGCCAAATGTGGATTCTCAATATATGCCTTGGGATCATGTTACTATGGCACCCACATTCAGAGGTGCTAGCCTCTCAATAAAGGGTGAGAGTTCTTTAAGGAATGTGAGGAGCCGTTCTGCACTTGATTTGGAATCCAACCTGGCTAGGACCCATTTATCAAGTAATCATTCACACAATTCCTACTCTGCTGTCCCACCAGTTGACCATTCAAGCATGGTGGATCTTTCTGGTCAGATTTCTACCTCTTTGACAAGGGATTGGAGCCAAATGAACATATCTCCTGCTAATGGAAGGGTGTTATTACCAGATACTAGTGCTTTTGGTTTTGAGACAAATCACTTCCTTGTTGGAAGTGGTGCTACTGCTAGTAATGCTTCTGTAGATGTTGGGGGCTTCCATCATGAATATGGTACAAACAGAAATCCTACTGCTCCTCAAAGTTTTCATAATCCGACTCAGACCACTAGGGGAATTCGAAGTAACTATTCTCAGAGATCCACTCCAACTTTTAGGGCTTCTTCAAGCTTGCGCTTGGGACATGTGACACCTTCAGATGATGGATTACCTATGGTAGCTGAAAGTTACAATTCTAGACACCCGAGGTCGTTGGCTACCATTGGCTGGAGGAATGGTGATAGAAATGGGAGGTCCAGAGTTTCTAGTGAGAGATATCGATCATTGGCTGATGAGGCTAGTCTCCATGATCGATTTTCCTCTGAGGGTTTCATGATTGTTGAGCGCGCTTCACTGTATGGTTCTAGGAATATGCTTGATCAGCACAGAGACATGAGGATGGACATAGATAACATGAGCTATGAGGAACTACTTGCACTTGGTGAGAGGATTGGCCATGTGAACACAGGAATGTCTGAGGATTTGATTTCCAAGTGTCTGACAGAAACAATATATTGTTCATCCGAGCAAAGTCAAGACGAAGGAAGCTGTGTAGTCTGTCTGGAAGAGTACAAGAACATGGACGATGTTGGGACACTAAAAACTTGTGGACATGACTACCATGTGAGCTGCATTAAAAAGTGGTTATCTATGAAGAAAGTATGTCCTATCTGCAAAGCTTCTGCTTTGCCTGAGGATAAGAAGGATAAATAA 1650 0.4273 MGHRHLYNTSPLFEGEADQNWNHMHTDQHYVNLGRNSTSENGSFIYPVENMAIDNISFPSHWNSTTRSSGYASSSLNIEVPPHQSDASGTSNDHFMHSSSAGAFFAVSENYVHQPSSSNYDRQAFHVDGGFIDLTMGSGRGPHKRKSPGIPSVYERGSTSRYFSAGSSTDLPMSSESRPEKPNVDSQYMPWDHVTMAPTFRGASLSIKGESSLRNVRSRSALDLESNLARTHLSSNHSHNSYSAVPPVDHSSMVDLSGQISTSLTRDWSQMNISPANGRVLLPDTSAFGFETNHFLVGSGATASNASVDVGGFHHEYGTNRNPTAPQSFHNPTQTTRGIRSNYSQRSTPTFRASSSLRLGHVTPSDDGLPMVAESYNSRHPRSLATIGWRNGDRNGRSRVSSERYRSLADEASLHDRFSSEGFMIVERASLYGSRNMLDQHRDMRMDIDNMSYEELLALGERIGHVNTGMSEDLISKCLTETIYCSSEQSQDEGSCVVCLEEYKNMDDVGTLKTCGHDYHVSCIKKWLSMKKVCPICKASALPEDKKDK. 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04609 549 SMART ring_2 496 537 IPR001841 -
Seca2g04609 549 MobiDBLite consensus disorder prediction 320 347 - -
Seca2g04609 549 SUPERFAMILY RING/U-box 486 542 - -
Seca2g04609 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 461 542 IPR013083 -
Seca2g04609 549 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 461 542 - -
Seca2g04609 549 MobiDBLite consensus disorder prediction 136 184 - -
Seca2g04609 549 MobiDBLite consensus disorder prediction 153 182 - -
Seca2g04609 549 Pfam Ring finger domain 495 538 IPR001841 -
Seca2g04609 549 CDD RING-H2_RNF24-like 496 541 - -
Seca2g04609 549 ProSiteProfiles Zinc finger RING-type profile. 496 538 IPR001841 -
Seca2g04609 549 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 102 542 IPR045191 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04609 Seca-Chr2 132109416 132114103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04609 1 548 C3H Transcription Factor Family AT2G37150 43.885 6.91e-124 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04609 - - gmx:100803627 967.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04609 2 132109416 132114103 Seca2g04609 2 132109416 132114103 ECH
Seca2g04609 2 132109416 132114103 Seca2g04609 2 132109416 132114103 PCT