Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04599 ATGGCCAACGACTCGTCGTTTTTGTTCGCCGGCATTCGCTTCGATAGAAAGAAATTTGGCTCCGATATTGCCAGGTTCCAGAAAAAAGATGGCGACAGTAACAGCAATTCGGTGAAGATTTTGAGTGCGGCTGAAGATGAAAGCGAGAAAACAAGAGAATCTATCGAAGTGAGAACACCGTCTGCGAAGAAGAAGAGGAAGCGCAAGGGAACCTCTTCAGAACCGGTTGAAGGATTCAGTGTGTTCAGAAATTCGACATCCACAACACAGTCCAAGTCGAACGGTGAAGTCCAAGCTGATGATGATGATGAGTCCGTAAAGCTGAAGAAAGAACAAAATAGACAACTTGAGCGGGATGCCATCATCAGAAAGAAGCATAGCATTCATGTCTCTGGTTATAATGTTCCATCCCCGCTGCAAAACTTTGAAGAGTTGGGATCAAGATATAAATGTAAGTCATATATATTGCGGAATCTGGCTGAACTTGGATTCAGAGAACCAACACCAATCCAAAGGCAGGCTATTCCTGTACTTTTACAGGGTCGTGAATGCTTTGCCTGTGCCCCAACTGGCTCTGGAAAAACCTTTGCATTTGTGTGTCCCATGCTTATGAGGCTTAAGGATCCTTCAAAAGATGGCATTCGAGCTGTTATCCTTTGTCATACCCGTGAATTATCTACCCAAACATTTCGAGAGTGCAAAAAGCTTGCTAAAGGGAAAAAATTTCATATCAAGTTAATGACTAAACAGCTTTTAAGAAATGCTGATTTTTCAAAATTTCCATGTGACATACTTATATCCACACCACTTCGATTACGCTTGGCTATCCGGAGGAAAAAAGTTGATCTCAGCAGAGTTGAGTATCTTGTCTTGGATGAATCTGATAAGCTATTTGAGCCTGAATTGTTCAAGCAGATTGATTCTGTTATGAAAGCATGCTCGAATCCCTCAATAATACGCTCACTGTTCAGTGCTACTTTACCTGATTTTGTTGAAGATCGAGCTCGAGAACTCATGCATGATGCTGTTCGGGTAATTGTTGGCAGGAAGTAA 1053 0.4207 MANDSSFLFAGIRFDRKKFGSDIARFQKKDGDSNSNSVKILSAAEDESEKTRESIEVRTPSAKKKRKRKGTSSEPVEGFSVFRNSTSTTQSKSNGEVQADDDDESVKLKKEQNRQLERDAIIRKKHSIHVSGYNVPSPLQNFEELGSRYKCKSYILRNLAELGFREPTPIQRQAIPVLLQGRECFACAPTGSGKTFAFVCPMLMRLKDPSKDGIRAVILCHTRELSTQTFRECKKLAKGKKFHIKLMTKQLLRNADFSKFPCDILISTPLRLRLAIRRKKVDLSRVEYLVLDESDKLFEPELFKQIDSVMKACSNPSIIRSLFSATLPDFVEDRARELMHDAVRVIVGRK. 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04599 350 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Seca2g04599 350 SMART ultradead3 163 350 IPR014001 -
Seca2g04599 350 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 345 IPR014001 -
Seca2g04599 350 MobiDBLite consensus disorder prediction 26 112 - -
Seca2g04599 350 CDD DEADc_DDX52 155 348 IPR044764 GO:0003724|GO:0005524|GO:0030490
Seca2g04599 350 MobiDBLite consensus disorder prediction 96 112 - -
Seca2g04599 350 Gene3D - 119 350 IPR027417 -
Seca2g04599 350 MobiDBLite consensus disorder prediction 77 95 - -
Seca2g04599 350 Pfam DEAD/DEAH box helicase 168 332 IPR011545 GO:0003676|GO:0005524
Seca2g04599 350 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 348 IPR027417 -
Seca2g04599 350 MobiDBLite consensus disorder prediction 43 60 - -
Seca2g04599 350 PANTHER RNA HELICASE 71 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04599 Seca-Chr2 132052385 132054815 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04599 138 349 Eukaryotic Initiation Factors Gene Family AT3G19760 28.972 8.24e-20 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04599 K14779 - gmx:100800969 554.673
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04599 2 132052385 132054815 Seca2g04599 2 132052385 132054815 ECH