Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04598 ATGAAAATCAGGAACATGGCTTCTGAAACAATAAAGCAAAAATTGGTTTTTACTGGAAGTGAAGAAGGAAAACTTATGGCAATTCGTCAAAGCTTTGCAGAGAGTCTTAATCCTCCAGTATTAGTCTTTGTCCAAAGCAAGGAGCGAGCCAAGGAGCTGTACGGTGAACTTGCATTTGACAACATTAGAGTTGATGTCATCCATTCTGATTTGTCTCAAGAAGAGCGAGAAAATGCTGTTGATAATTTCAGAATGGGTAAAACATGGGTTTTGATTGCTACTGATGTAGTTGCTCGGGGCATGGACTTCAAAGGTGTGAACTGTGTGGTCAATTATGATTTCCCAGATTCTGCTGCTGCATATATCCATAGAATAGGTCGTTCTGGCAGAGCAGGGAGAACTGGAGAAGCGATTACATTTTACACAGAGGAAGACATTCCATTCCTGCGGAATGTAGCTAATCTTATGGCAGCGTCAGGCTGTGAGGTTCCATCCTGGCTAAAGGAGTTGCGCAAAAGGAAGTGGAAGAAACACCGGCCTAAAAGAGATTCAATCACAACCAAACCAGATGTATAA 576 0.4201 MKIRNMASETIKQKLVFTGSEEGKLMAIRQSFAESLNPPVLVFVQSKERAKELYGELAFDNIRVDVIHSDLSQEERENAVDNFRMGKTWVLIATDVVARGMDFKGVNCVVNYDFPDSAAAYIHRIGRSGRAGRTGEAITFYTEEDIPFLRNVANLMAASGCEVPSWLKELRKRKWKKHRPKRDSITTKPDV. 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04598 191 SMART helicmild6 51 132 IPR001650 -
Seca2g04598 191 Pfam Helicase conserved C-terminal domain 34 132 IPR001650 -
Seca2g04598 191 CDD SF2_C_DEAD 11 141 - -
Seca2g04598 191 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 175 IPR027417 -
Seca2g04598 191 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 10 171 IPR001650 -
Seca2g04598 191 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 7 178 - -
Seca2g04598 191 Gene3D - 1 176 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04598 Seca-Chr2 132050209 132052283 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04598 6 170 Eukaryotic Initiation Factors Gene Family AT3G19760 36.364 7.88e-29 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04598 K14779 - gmx:100800969 345.51