Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04595 ATGGGGAGGAAGGGAAATTGGTTTTCTACTGTGAAGAAAGCTCTCAGCCCTGACTCAAAGAAATCAAGTAAATCAAAGAAGAAATGGTTTGGGAAGCAAAAGTTGCAGGCTCCAGACTCATCACACCCAGAAACTGATAAAGCACCACCTCTTCCTCCACCAGAAGAGATTAAATTAACTGAGATAGAAAATGAAAACAGTCACATTCATGTTGCTGAAGTAGCAACTGTTGTGGATGTTGAGGAACCTGTTCCTTCTGCTCAAACAGCAGTGGTTAAGGTTGAACCTACCACAATTGCTCGGTTTGCTGGTAAACCAAAGGATGAAGTTGCAGCAATCAAGATTCAAACAGCTTTTCGGGGGTACTTGGCAAGAAGAGCATTGCGGGCTTTGAGAGGGCTGGTCAGGTTGAAATCATTGATGGAAGGGCCCATTGTAAAACGCCAAGCAATGAGTACCCTCCGCTCTATGCAGACGTTAGCTCGCGTGCAATCTCAGATCCGTTCTAGGAGGATCAGAATGTTAGAGGAGAATCAGGCTCTACAGAAACAGCTCTTACAGAAGCATGCAAGAGAGCTTGAGAGCATGCGGATTGGGGAGGAATGGGATGATAGCCTGCAATCCAAAGAACAAATCGAAGCCAAGTTACTAAGCAAGTATGAGGCTGCTATGAGAAGAGAAAGAGCACTGGCTTATGCATTCACTCATCAGCAAAACTGGAAGAACTCATCTAGATCTATAAATCCAATGTTCATGGATCCAACCAATCCTAGCTGGGGTTGGAGCTGGTTGGAACGATGGATGGCAGCCAGGCCTTGGGAGGGTCGTAGCCTTATGGATAAAGAGCAGAATGACCATTCATCTGTAAAAAGTTCAAGCCGTAGCATTACTGGTGGAGGAGAAATCAGCAAATCATTTGCTCGTTTCCAGCTCAATTCTGAAGTACATTCTCCAGCAGCCAGTCAAAATCCTGGCTCACCTAGCTTCCCACCCCATTCAACTCCTTCCAGGCCAGCTTCTTCATCAGTTGGTAAGAAGCCAAAGAAGGTAAGCCCAAGGGGCAGCTGGATTATGGATGATGACTCCAAAAGCATGGTCAGTGTACAGTCAGACCGGTTCCGTAGGCACTCCATTGCCGGTTCAACAGTCAGAGATGATGAGAGCCTTGCTAGCTCTCCAGCAGTTCCAAGTTACATGGTGCCAACTCAATCTGCAAAAGCCAGGTCAAGGACACAAAGTCCATTAGCCACAGAAAATGGTAAAACAGAAAAGGGGTCCTTTGGGACTGCAAAGAAACGTCTTTCTTTCCCAGCTTCACCTGCCAGACCAAGGCGTCATTCAGGTCCACCAAAGGTAGAAAGCAGCAGCATAAATGCAGAGCTCACTGTGGAAAATGGTGTGGCCAGTTGA 1410 0.466 MGRKGNWFSTVKKALSPDSKKSSKSKKKWFGKQKLQAPDSSHPETDKAPPLPPPEEIKLTEIENENSHIHVAEVATVVDVEEPVPSAQTAVVKVEPTTIARFAGKPKDEVAAIKIQTAFRGYLARRALRALRGLVRLKSLMEGPIVKRQAMSTLRSMQTLARVQSQIRSRRIRMLEENQALQKQLLQKHARELESMRIGEEWDDSLQSKEQIEAKLLSKYEAAMRRERALAYAFTHQQNWKNSSRSINPMFMDPTNPSWGWSWLERWMAARPWEGRSLMDKEQNDHSSVKSSSRSITGGGEISKSFARFQLNSEVHSPAASQNPGSPSFPPHSTPSRPASSSVGKKPKKVSPRGSWIMDDDSKSMVSVQSDRFRRHSIAGSTVRDDESLASSPAVPSYMVPTQSAKARSRTQSPLATENGKTEKGSFGTAKKRLSFPASPARPRRHSGPPKVESSSINAELTVENGVAS. 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04595 469 Gene3D - 87 136 - -
Seca2g04595 469 Pfam Protein of unknown function (DUF4005) 385 445 IPR025064 -
Seca2g04595 469 Pfam IQ calmodulin-binding motif 111 129 IPR000048 GO:0005515
Seca2g04595 469 SMART iq_5 107 129 IPR000048 GO:0005515
Seca2g04595 469 MobiDBLite consensus disorder prediction 315 469 - -
Seca2g04595 469 MobiDBLite consensus disorder prediction 280 299 - -
Seca2g04595 469 MobiDBLite consensus disorder prediction 395 424 - -
Seca2g04595 469 MobiDBLite consensus disorder prediction 1 55 - -
Seca2g04595 469 MobiDBLite consensus disorder prediction 451 469 - -
Seca2g04595 469 PANTHER IQ-DOMAIN 5-RELATED 1 451 - -
Seca2g04595 469 ProSiteProfiles IQ motif profile. 108 136 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04595 Seca-Chr2 132027378 132031935 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04595 1 469 IQD Protein Family AT5G03040 53.333 2.01e-152 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04595 - - gmx:100800080 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04595 2 132027378 132031935 Seca2g04595 2 132027378 132031935 ECH
Seca8g05413 8 145107497 145112038 Seca2g04595 2 132027378 132031935 PCT