Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04589 AAGTGGAAATGGGGCCCAATCGTCACCCCGATTAAAGCCCAAAACACCGGTCCAGAAGAGTACTACCTTATTATTTTCCGTTTTCCCGCCAATAGCCCGGCGAACGCGAGGAGGTGGATCGGAAACGGAATGCACAGAACTCCAGAAGAGACGGAGCAGAGGATCCGACATGGATTCGGATCCTTCTCCATGGACCTATTAGAGTTACTGGACATTTACTTTCCTCAGCAACTGTTCACCGTCGAAGAAAACTGGCTTAATCTCACAACCGCTCTTCTTTCCTTCTTTTCTTCTCCGCCGGGCCTAAACGTCGCTTCTCAGGTGAAAAATGATTACGGAAACTATGTTTTATCACTTGACTTTGAGCAATTCAAAAAAATGTGTCATATTGAGGAATTTTATGAAATGTTAATGGAGAAACCTAAAATTGCCCTCTTATGCATGAGTGCTGCCGTTCACAAGGTTTTGCTTTCCAAATGGGACATTGACAAGCTGGAGCTTGGTGCAAAAGTAGATATCCGTCTTCATAACTGTCCTGAAACTATGATTGCACTGAAGAACTTAAAAGCAGCTTACATTGACAAACTTGTCTCAGTGCGAGGCACTGCTGTGAAAGTCAGCACTGTCAGGCCTCTTGTGGTAGAAATGAGTTTCGAATGCAGTAAGTGTAAACAAACAATTACGCGTATATTTCCTGATGGAAAATTTTCACCGCCATCAACTTGCAATTTGAATGGCTGCAAGAGCAAAATCTTTAATCCATTGCGATCTACTGCTCAAACTATTGATTTTCAAAAAATAAGAGTTCAAGAATTATTAAAACCTGAAGATCATGAAGAAGGACGGGTGCCTCGAACAGTAGAATGTGAGCTTACCCAAGATCTTGTTGATGCATGCATACCTGGAGATGTGGTGACTGTTACTGGAATTATCAGGGGAATTAACACTTACATGGATATTGGAGGAGGCAAGTCAAAGAACAGAAACCAGGGATTTTACTATCTATATCTTGAAGCTATATCCGTAAAAAATTCTAAGTCACAGTCCATACCTGAGGATTCACAAGACTCTAATCCAAAAGCTAGACCGACTGAGCTGTTTGATTTGTTTTCATTTTCTTCAAAGGATTTAGAATTTGTTGTGAAGTTTGCAGAGGAGCATGGTTCAGATTTATTTCGGCAAATCCTTCAATCTATATGCCCATCCATCTACGGGCATGAACTTGTTAAAGCTGGGATAACACTGGCATTATTTGGTGGTGTAAGAAAGCATTCTATGGATCAAAATAAGGTTCCTGTGAGGGGAGATATTCATGTCATAATCGTTGGCGATCCTGGTCTAGGTAAGAGCCAGCTGCTACAAGCAGCAGCAGCTGTTTCTCCACGCGGTATCTATGTCTGTGGTAATGCCACAACCAAAGCTGGCCTCACAGTAGCTGTAGTGAAGGATTCCATGACAAATGACTACGCTTTTGAGGCTGGTGCTATGGTGCTGGCTGATAGTGGATTGTGCTGTATTGATGAGTTCGATAAAATGTCATCAGAGCATCAGGCTTTACTAGAGGCAATGGAGCAACAGTGTGTCTCTATTGCAAAGGCGGGGCTAGTAGCAAGTTTATCATCCCGGACATCTGTCTTAGCGGCTGCAAACCCCGTCGGTGGTCATTATAAGTAA 1674 0.4271 KWKWGPIVTPIKAQNTGPEEYYLIIFRFPANSPANARRWIGNGMHRTPEETEQRIRHGFGSFSMDLLELLDIYFPQQLFTVEENWLNLTTALLSFFSSPPGLNVASQVKNDYGNYVLSLDFEQFKKMCHIEEFYEMLMEKPKIALLCMSAAVHKVLLSKWDIDKLELGAKVDIRLHNCPETMIALKNLKAAYIDKLVSVRGTAVKVSTVRPLVVEMSFECSKCKQTITRIFPDGKFSPPSTCNLNGCKSKIFNPLRSTAQTIDFQKIRVQELLKPEDHEEGRVPRTVECELTQDLVDACIPGDVVTVTGIIRGINTYMDIGGGKSKNRNQGFYYLYLEAISVKNSKSQSIPEDSQDSNPKARPTELFDLFSFSSKDLEFVVKFAEEHGSDLFRQILQSICPSIYGHELVKAGITLALFGGVRKHSMDQNKVPVRGDIHVIIVGDPGLGKSQLLQAAAAVSPRGIYVCGNATTKAGLTVAVVKDSMTNDYAFEAGAMVLADSGLCCIDEFDKMSSEHQALLEAMEQQCVSIAKAGLVASLSSRTSVLAAANPVGGHYK. 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04589 557 Gene3D - 212 262 - -
Seca2g04589 557 ProSiteProfiles MCM family domain profile. 391 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca2g04589 557 FunFam Retrovirus-related Pol polyprotein LINE-1 370 524 - -
Seca2g04589 557 Coils Coil 506 526 - -
Seca2g04589 557 Gene3D - 185 314 IPR012340 -
Seca2g04589 557 FunFam DNA helicase MCM8 isoform X1 212 263 - -
Seca2g04589 557 PRINTS Mini-chromosome maintenance (MCM) protein family signature 434 449 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca2g04589 557 PRINTS Mini-chromosome maintenance (MCM) protein family signature 521 534 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca2g04589 557 PRINTS Mini-chromosome maintenance (MCM) protein family signature 494 508 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca2g04589 557 PRINTS Mini-chromosome maintenance (MCM) protein family signature 545 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca2g04589 557 SMART mcm 181 557 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca2g04589 557 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 551 IPR027417 -
Seca2g04589 557 Pfam MCM P-loop domain 389 557 IPR001208 GO:0003677|GO:0005524|GO:0032508
Seca2g04589 557 SUPERFAMILY Nucleic acid-binding proteins 112 315 IPR012340 -
Seca2g04589 557 Gene3D - 369 557 IPR027417 -
Seca2g04589 557 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 92 556 IPR031327 GO:0003677|GO:0005524|GO:0032508
Seca2g04589 557 Pfam MCM OB domain 185 313 IPR033762 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04589 Seca-Chr2 131961285 131966010 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04589 63 556 Core DNA Replication Machinery Family AT3G09660 70.565 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04589 K10737 - gmx:100784549 904.434