Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Seca2g04585 | ATGTTGGATCTCAATCTCAACGCCGATTCCCCTTCCGATAACCACACTCTTCCCCTCTCCAACACTCAAATGGAAAGCTCCGGCAGCTTTGATTCCTCCGTCGTCAACGCCGCCGACACCGAAGATTCTTCCTCTTACGGCGATGCCTTCGCTTACAACTTCGCCATACTCAACAATAGCAACAGTAACAGCGCCGTCGACGACGCCACCACCTCCAGAGCACTTCAACTCCCCGCCGCCGGCCTCGGAGACGCTTCCTCTGTACGGACCATTCAGCTTTTTCCGGCCGCCGAGTTAGGAATCTCGCCGTCCGCCGGAAGTAAAGGATGGCTGGATTTCTCGTCGGATCATCATAACGGCGGTGTGCCGGAGCAGAGGATTGTTGCTCCCCGGCCACAACAGGTGAAAAAGAGCCGTCGAGGACCTAGGTCGAGGAGCTCGCAGTATCGCGGCGTTACTTTCTATCGGAGAACGGGAAGATGGGAATCGCATATTTGGGATTGTGGGAAGCAAGTGTACTTAGGTGGATTTGATACTGCGCATGCTGCAGCAAGGGCTTATGATCGAGCTGCAATCAAATTCCGTGGCGTTGATGCGGATATCAATTTCAACGTCAGCGATTACGAAGATGATATAAAACAGATGAGTAACTTCACAAAGGAAGAGTTTGTGCATATTCTTCGTCGACAGAGCACTGGTTTCTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTACATAAATGCGGGCGATGGGAAGCTCGAATGGGGCAGTTTCTTGGGAAGAAGTATATATATCTCGGGCTATTCGATAGTGAGCTAGAGGCTGCAAGAGCTTATGATAGGGCTGCTATCAAATGCAATGGAAGGGAAGCAGTCACAAACTTCGAGCCCAGCTCATATGAAGGGGAGTTAATTTCTCAGTCTGATAATGAAGATAACAAGCAAAGTCTTGATCTTAATTTGGGCATAGCTCCTCCTTCTAACTCTGATGGTCAAATGAAGAACGTACACCACAATGGGAGTGGTTTACAAGTTCAGCGTAGCTGGGATGACATCTCTGTTGATAAAAGTGTTATGTGTGAGCACTCTGGACCAAGATCAATGAATGTTCAGCCATCTTATGGCTTCTCCATGGCATCTGAGCATCAACCTTCAGCCTGGAGTGGTACCAATTTCTTTCCCAACTGCAAGGAAACAGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCATGGCAAGTCCAAGGTCCATATGGGGGGGCAACTATGATTCCACCGTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAGTAATACCATCAGCTGCGGATAGTCAAATTCAATTTCCAAACATGACGTTCCTTCATCCTCATTTTCCTCCTTCAATCACTAACTCCAGCACCATATCCCCATTCTACTGCAGGAGTTGA | 1452 | 0.4883 | MLDLNLNADSPSDNHTLPLSNTQMESSGSFDSSVVNAADTEDSSSYGDAFAYNFAILNNSNSNSAVDDATTSRALQLPAAGLGDASSVRTIQLFPAAELGISPSAGSKGWLDFSSDHHNGGVPEQRIVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYEDDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGELISQSDNEDNKQSLDLNLGIAPPSNSDGQMKNVHHNGSGLQVQRSWDDISVDKSVMCEHSGPRSMNVQPSYGFSMASEHQPSAWSGTNFFPNCKETETAIEKRMEAAPVPNWAWQVQGPYGGATMIPPFSAAASSGFPSTVIPSAADSQIQFPNMTFLHPHFPPSITNSSTISPFYCRS. | 484 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Seca2g04585 | 483 | MobiDBLite | consensus disorder prediction | 7 | 32 | - | - | |
Seca2g04585 | 483 | MobiDBLite | consensus disorder prediction | 121 | 149 | - | - | |
Seca2g04585 | 483 | SUPERFAMILY | DNA-binding domain | 147 | 206 | IPR016177 | GO:0003677 | |
Seca2g04585 | 483 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 109 | 329 | - | - | |
Seca2g04585 | 483 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Seca2g04585 | 483 | CDD | AP2 | 239 | 299 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | Gene3D | AP2/ERF domain | 147 | 206 | IPR036955 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | Gene3D | AP2/ERF domain | 239 | 298 | IPR036955 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | Pfam | AP2 domain | 239 | 289 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | Pfam | AP2 domain | 148 | 196 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | FunFam | AP2-like ethylene-responsive transcription factor | 147 | 206 | - | - | |
Seca2g04585 | 483 | CDD | AP2 | 148 | 206 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | SMART | rav1_2 | 240 | 303 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | SMART | rav1_2 | 148 | 210 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | ProSiteProfiles | AP2/ERF domain profile. | 148 | 204 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | SUPERFAMILY | DNA-binding domain | 239 | 298 | IPR016177 | GO:0003677 | |
Seca2g04585 | 483 | PRINTS | Ethylene responsive element binding protein signature | 241 | 252 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | PRINTS | Ethylene responsive element binding protein signature | 279 | 299 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | ProSiteProfiles | AP2/ERF domain profile. | 240 | 297 | IPR001471 | GO:0003700|GO:0006355 | |
Seca2g04585 | 483 | FunFam | AP2-like ethylene-responsive transcription factor | 239 | 299 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Seca2g04585 | Seca-Chr2 | 131911647 | 131915078 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Seca2g04585 | 127 | 330 | AP2-EREBP Transcription Factor Family | AT4G36920 | 78.537 | 3.12e-96 | 295 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-AP2 | Seca2g04585 | AP2 | 1.1e-09 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Seca2g04585 | K09284 | - | gmx:100797238 | 696.427 |