Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04585 ATGTTGGATCTCAATCTCAACGCCGATTCCCCTTCCGATAACCACACTCTTCCCCTCTCCAACACTCAAATGGAAAGCTCCGGCAGCTTTGATTCCTCCGTCGTCAACGCCGCCGACACCGAAGATTCTTCCTCTTACGGCGATGCCTTCGCTTACAACTTCGCCATACTCAACAATAGCAACAGTAACAGCGCCGTCGACGACGCCACCACCTCCAGAGCACTTCAACTCCCCGCCGCCGGCCTCGGAGACGCTTCCTCTGTACGGACCATTCAGCTTTTTCCGGCCGCCGAGTTAGGAATCTCGCCGTCCGCCGGAAGTAAAGGATGGCTGGATTTCTCGTCGGATCATCATAACGGCGGTGTGCCGGAGCAGAGGATTGTTGCTCCCCGGCCACAACAGGTGAAAAAGAGCCGTCGAGGACCTAGGTCGAGGAGCTCGCAGTATCGCGGCGTTACTTTCTATCGGAGAACGGGAAGATGGGAATCGCATATTTGGGATTGTGGGAAGCAAGTGTACTTAGGTGGATTTGATACTGCGCATGCTGCAGCAAGGGCTTATGATCGAGCTGCAATCAAATTCCGTGGCGTTGATGCGGATATCAATTTCAACGTCAGCGATTACGAAGATGATATAAAACAGATGAGTAACTTCACAAAGGAAGAGTTTGTGCATATTCTTCGTCGACAGAGCACTGGTTTCTCAAGGGGAAGCTCCAAATACAGGGGAGTTACTCTACATAAATGCGGGCGATGGGAAGCTCGAATGGGGCAGTTTCTTGGGAAGAAGTATATATATCTCGGGCTATTCGATAGTGAGCTAGAGGCTGCAAGAGCTTATGATAGGGCTGCTATCAAATGCAATGGAAGGGAAGCAGTCACAAACTTCGAGCCCAGCTCATATGAAGGGGAGTTAATTTCTCAGTCTGATAATGAAGATAACAAGCAAAGTCTTGATCTTAATTTGGGCATAGCTCCTCCTTCTAACTCTGATGGTCAAATGAAGAACGTACACCACAATGGGAGTGGTTTACAAGTTCAGCGTAGCTGGGATGACATCTCTGTTGATAAAAGTGTTATGTGTGAGCACTCTGGACCAAGATCAATGAATGTTCAGCCATCTTATGGCTTCTCCATGGCATCTGAGCATCAACCTTCAGCCTGGAGTGGTACCAATTTCTTTCCCAACTGCAAGGAAACAGAAACAGCAATAGAGAAGAGGATGGAAGCTGCTCCCGTGCCAAATTGGGCATGGCAAGTCCAAGGTCCATATGGGGGGGCAACTATGATTCCACCGTTCTCTGCTGCAGCATCATCAGGATTCCCTTCAACAGTAATACCATCAGCTGCGGATAGTCAAATTCAATTTCCAAACATGACGTTCCTTCATCCTCATTTTCCTCCTTCAATCACTAACTCCAGCACCATATCCCCATTCTACTGCAGGAGTTGA 1452 0.4883 MLDLNLNADSPSDNHTLPLSNTQMESSGSFDSSVVNAADTEDSSSYGDAFAYNFAILNNSNSNSAVDDATTSRALQLPAAGLGDASSVRTIQLFPAAELGISPSAGSKGWLDFSSDHHNGGVPEQRIVAPRPQQVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVDADINFNVSDYEDDIKQMSNFTKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKKYIYLGLFDSELEAARAYDRAAIKCNGREAVTNFEPSSYEGELISQSDNEDNKQSLDLNLGIAPPSNSDGQMKNVHHNGSGLQVQRSWDDISVDKSVMCEHSGPRSMNVQPSYGFSMASEHQPSAWSGTNFFPNCKETETAIEKRMEAAPVPNWAWQVQGPYGGATMIPPFSAAASSGFPSTVIPSAADSQIQFPNMTFLHPHFPPSITNSSTISPFYCRS. 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04585 483 MobiDBLite consensus disorder prediction 7 32 - -
Seca2g04585 483 MobiDBLite consensus disorder prediction 121 149 - -
Seca2g04585 483 SUPERFAMILY DNA-binding domain 147 206 IPR016177 GO:0003677
Seca2g04585 483 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 109 329 - -
Seca2g04585 483 MobiDBLite consensus disorder prediction 1 32 - -
Seca2g04585 483 CDD AP2 239 299 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 Gene3D AP2/ERF domain 147 206 IPR036955 GO:0003700|GO:0006355
Seca2g04585 483 Gene3D AP2/ERF domain 239 298 IPR036955 GO:0003700|GO:0006355
Seca2g04585 483 Pfam AP2 domain 239 289 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 Pfam AP2 domain 148 196 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 FunFam AP2-like ethylene-responsive transcription factor 147 206 - -
Seca2g04585 483 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 SMART rav1_2 240 303 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 SMART rav1_2 148 210 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 ProSiteProfiles AP2/ERF domain profile. 148 204 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 SUPERFAMILY DNA-binding domain 239 298 IPR016177 GO:0003677
Seca2g04585 483 PRINTS Ethylene responsive element binding protein signature 241 252 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 PRINTS Ethylene responsive element binding protein signature 279 299 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 ProSiteProfiles AP2/ERF domain profile. 240 297 IPR001471 GO:0003700|GO:0006355
Seca2g04585 483 FunFam AP2-like ethylene-responsive transcription factor 239 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04585 Seca-Chr2 131911647 131915078 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04585 127 330 AP2-EREBP Transcription Factor Family AT4G36920 78.537 3.12e-96 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Seca2g04585 AP2 1.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04585 K09284 - gmx:100797238 696.427