Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04571 ATGATGGATATTCAGGAAGCAGAAAGAGTGGTTGTTGCCAAACCAGTTGCTTCAAGGCCTAGTTGTTCTACTTTCAAATCTTTCTCAGAGCTCTTAGCTGGTGCAATCAATGCCTCTCCCCCTATTGTATCTCCTCAAACTACAGTTTCTGCCATTAGACCAAAGACAGTGAGATTCAAGCCAGCTGTGAATAGCTCCCCTGCTGGGTCTGTTTCTTCTCAGGCTGACATTTCTGGTGCTGCACTTAACAATTCTTCTGACATGTGTCCTAAACCTGACACCATGCAGTCCCTCATATACAAACCAATGCCAAAACTTGTGTCAAAAACAACTGTTTCTCTTTTGGCAAATATGGGAAATTGTAATACTAGTCAGCAACAACCAAAGCAATCAATGGAGGCCAATCTTCAACATGCTAACCATGAAAAATTTAGAACCAATATGAGCTCAAATCTTCATCAGAACATCACCCCACATGCTGAAACATATCAGAACACCGAACCTTGTAAGATGGTACAACAGAACCTTGAGGAGGATCAAAAGGCTTTAACATCTACTATTAATGGTGATAGACCTTCTTATGATGGGTATAATTGGAGAAAATATGGACAGAAGCAAGTGAAAGGAAGTGAATACCCAAGAAGTTATTACAAGTGCACACATCCTAATTGTCCAGTGAAAAAGAAAGTTGAAAGATCATATGATGGACAAATTGCAGAAATTGTATACAAAGGTGAGCACAATCATCCAAAGCCACAGCTTCCTAAGCGCAACTCAACAGGGACACAAGGTTCAGGAATGATGTCTGATGGAATGGCTCAAGATATATGGAGTAATAATAATCAGAGTGAAAGGAATGAAGGCAATGAAGGTAGAATACAGAACCAGAATGACACAGGACTGTCTGTGCATTCAGCTTATCATGTCAAGGCTCCACAGCCTAATGATTCTGTGCTAATTGGTGCAATTAATGCTGGTGGAGGAAACTTAGAAAATTCTTGTGGTCTAAGTGGGGAATGTGAGGAAGGAAGCAAGGGATTTGAGGCAGAGGAAGATGAACCCAGAAGTAAAAGAAGGAAAAATGAGAATCAATCCAATGAAGCAGCTGTATCAGAGGAAGGTTTAGCAGAGCCACGCGTTGTGACACAAAGTTCTATTGATTCTGAAATACTTGGAGATGGCTTTCGCTGGAGGAAATATGGACAGAAGGTGGTGAAGGGAAATCCATATCCCAGAAGCTACTATAGATGCACTAATATCAAGTGTAACGTTCGCAAACATGTGGAGAGAGCAATAGATGACCCAAAATCATTTGTGACTACATATGAGGGAAAGCACAACCATGAGATGCCACTCAAGAACACAGCAAGTGTGGCCTCTGAGAAAGATTCACAGGCTTCTCTTAGTAAAGATAAACCATAG 1422 0.4107 MMDIQEAERVVVAKPVASRPSCSTFKSFSELLAGAINASPPIVSPQTTVSAIRPKTVRFKPAVNSSPAGSVSSQADISGAALNNSSDMCPKPDTMQSLIYKPMPKLVSKTTVSLLANMGNCNTSQQQPKQSMEANLQHANHEKFRTNMSSNLHQNITPHAETYQNTEPCKMVQQNLEEDQKALTSTINGDRPSYDGYNWRKYGQKQVKGSEYPRSYYKCTHPNCPVKKKVERSYDGQIAEIVYKGEHNHPKPQLPKRNSTGTQGSGMMSDGMAQDIWSNNNQSERNEGNEGRIQNQNDTGLSVHSAYHVKAPQPNDSVLIGAINAGGGNLENSCGLSGECEEGSKGFEAEEDEPRSKRRKNENQSNEAAVSEEGLAEPRVVTQSSIDSEILGDGFRWRKYGQKVVKGNPYPRSYYRCTNIKCNVRKHVERAIDDPKSFVTTYEGKHNHEMPLKNTASVASEKDSQASLSKDKP. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04571 473 MobiDBLite consensus disorder prediction 444 473 - -
Seca2g04571 473 FunFam WRKY transcription factor 177 253 - -
Seca2g04571 473 ProSiteProfiles WRKY domain profile. 386 451 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 Gene3D WRKY domain 376 452 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 Gene3D WRKY domain 177 253 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 SMART WRKY_cls 391 450 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 SMART WRKY_cls 193 251 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 MobiDBLite consensus disorder prediction 244 297 - -
Seca2g04571 473 SUPERFAMILY WRKY DNA-binding domain 191 252 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 ProSiteProfiles WRKY domain profile. 195 252 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 127 466 IPR044810 GO:0003700
Seca2g04571 473 MobiDBLite consensus disorder prediction 348 366 - -
Seca2g04571 473 MobiDBLite consensus disorder prediction 337 380 - -
Seca2g04571 473 Pfam WRKY DNA -binding domain 195 250 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 Pfam WRKY DNA -binding domain 393 449 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 SUPERFAMILY WRKY DNA-binding domain 386 451 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca2g04571 473 FunFam WRKY transcription factor 379 452 - -
Seca2g04571 473 MobiDBLite consensus disorder prediction 254 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04571 Seca-Chr2 131818726 131824565 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04571 93 452 WRKY Transcription Factor Family AT2G37260 45.144 8.82e-89 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca2g04571 WRKY 6.9e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04571 - - gmx:100794069 771.926