Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04570 ATGGGTTGGATTCCCTGTTCTGGAAATTCAGGCACTAAGAAGAAGATTGAGAAGATGGAAGTGCAGGACAGCCTCGTTGGTCAGATCAAAGCCACCCCAGGGAAGTTGAAGAGGAATTCATCAACAAATTCCAAAGATACATCAAAAAATGGGAACCCTGATCACATTGCAGCACAGACTTTCTCATTCCGGGAGTTAGCAACTGCAACTAGAAATTTTAGAGCAGAATGTCTTTTGGGTGAGGGAGGCTTTGGTAGAGTGTACAAAGGGCGTCTGGAAAGTATTAATCAGGTTGTCGCAATTAAGCAACTTGACCGAAATGGACTGCAAGGGAATAGGGAATTCCTTGTTGAAGTGTTGATGTTAAGTCTACTTCACCACCCTAACCTTGTCAACCTTATTGGTTATTGTGCTGATGGAGATCAAAGGCTTCTAGTTTATGAATATATGCCATTAGGATCCTTGGAAGACCACTTGCACGATATTGCTCCTGGAAAGAAACGACTTGACTGGAACACGCGAATGAAAATAGCTGCTGGGGCAGCAAAGGGATTGGAATATCTTCATGACAAAGCTAATCCTCCGGTCATATACCGAGATTTAAAGTGCTCCAACATTTTGCTTGGTGAAGGGTATCACCCAAAGTTATCTGATTTTGGTTTAGCTAAACTTGGCCCAGTTGGAGAAAACACCCATGTATCAACAAGGGTTATGGGCACCTATGGATATTGTGCTCCAGAGTATGCAATGACCGGTCAACTGACTCTGAAATCAGATGTTTATAGCTTTGGTGTAGTTCTTCTGGAAATAATTACTGGAAGGAAAGCAATTGACAATTCAAAATCTGCAGGAGAGCAGAATCTTGTTGCATGGGTAAGAAACTTACCCTTGTTTAAAGATAGAAGAAAATTTTCACAAATGGCTGATCCAATGCTCCAAGGTCAATACCCTCCAAGAGGGCTATACCAGGCCCTAGCTGTTGCAGCAATGTGTGTTCAGGAACAGGCTAATATGCGTCCAGTTATAGCTGATGTTGTCACAGCTTTGTCTTACCTTGCTTCACAAAGATATGATCCAAATACACAGACAGTCCAAAGCTCTCGCCTTGCTCCTGGTACACCTCCTAGAACCAGGAGGGGGCAATGA 1146 0.4311 MGWIPCSGNSGTKKKIEKMEVQDSLVGQIKATPGKLKRNSSTNSKDTSKNGNPDHIAAQTFSFRELATATRNFRAECLLGEGGFGRVYKGRLESINQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDIAPGKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEGYHPKLSDFGLAKLGPVGENTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSKSAGEQNLVAWVRNLPLFKDRRKFSQMADPMLQGQYPPRGLYQALAVAAMCVQEQANMRPVIADVVTALSYLASQRYDPNTQTVQSSRLAPGTPPRTRRGQ. 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04570 381 SMART serkin_6 73 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04570 381 MobiDBLite consensus disorder prediction 34 55 - -
Seca2g04570 381 FunFam Serine/threonine-protein kinase PBS1 150 367 - -
Seca2g04570 381 Gene3D Transferase(Phosphotransferase) domain 1 150 370 - -
Seca2g04570 381 SUPERFAMILY Protein kinase-like (PK-like) 59 364 IPR011009 -
Seca2g04570 381 MobiDBLite consensus disorder prediction 32 55 - -
Seca2g04570 381 CDD STKc_IRAK 79 349 - -
Seca2g04570 381 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Seca2g04570 381 PANTHER OS07G0668900 PROTEIN 23 361 - -
Seca2g04570 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Seca2g04570 381 Pfam Protein tyrosine and serine/threonine kinase 77 348 IPR001245 GO:0004672|GO:0006468
Seca2g04570 381 MobiDBLite consensus disorder prediction 360 381 - -
Seca2g04570 381 Gene3D Phosphorylase Kinase; domain 1 42 149 - -
Seca2g04570 381 FunFam Serine/threonine-protein kinase PBS1 45 149 - -
Seca2g04570 381 ProSiteProfiles Protein kinase domain profile. 73 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04570 Seca-Chr2 131806920 131810460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04570 33 354 Glycoside Hydrolase AT3G07070 67.702 3.39e-162 459
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Seca2g04570 PK_Tyr_Ser-Thr 5.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04570 - - gmx:100818024 725.317