Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04564 ATGGTACAAGGATTTGGGAACCATCTCTATGGGGAATTCTCAATGGCTGTAATTCAAGCCAATAGTTCTTTGGAGGATCGTAGCCAACTTGAATCTGGACCTTTGAGTTCTGACTATTTGGGTCCTCAAGGGACCTTTATAGGTGTATATGATGGTCATGGTGGAACTGCAGCCTCACAGTTTGTCACTGACAATCTTTTCAGCAATTTCAAGACAGGCTGTGCTGCTGAACATCAAGGTATTTCAGAGAAGGTTATCAGAAAGGCCTTTGTGGCAACAGAAGAGGGGTTTCTCTCTCTTGTCAAGAAACAGTGGCTAAGCAAGCCACAGATTGCATCAGCGGGTACATGTTGTTTGGCTGGGATAATTTGCAATGGTATGTTATATGTTGCAAATGCAGGAGACTCAAGGGCGGTGTTAGGAAGAGTGGAGAGAGCAACAAAGGAAACATTAGCTATTCAATTGTCTGCAGAACACAACGTTAACATAGAGACCGAGAGAGATGAACTTCGGTCAAAGCACCCCTATGATTCACAAATTGTGGTTATGAAACACAATGTTTGGCGTGTGAAAGGACTCATACAGGTTTCAAGATCCATAGGTGATGCATATCTGAAGAAAGCAGAATTTAACAAGGAGCCTCTACCATATAAGTTTAGACTACCTGAAACCTTCTTCAAGCCAATTCTTAGTTGTGAACCATCAATATCAATGCATAAACTCCATCCTGATGATCAATTTCTCATCTTTGCTTCTGATGGTTTATGGGAGCAGCTTAGCAACCAAGAGGCTGTTGATATAGTCAGCAATAACCCACGCAATGGAATTGCTAGGAGGCTTGTGAAAGCTGCACTTAGAGAAGCAGCTAAGAAGAGAGAAATGAGATTCTCAGATCTCCAAAAGATTGAACAAGGTGTGAGGAGACACTTCCATGATGATATTACAGTAATTGTTGTATTTCTAAATCCCAAATTGATTGATAATAGCTCTCTCTGGGGTTCTCCACTTTCAATCAGAGGAAGTGGGCATGCAAATTCTTAG 1041 0.4159 MVQGFGNHLYGEFSMAVIQANSSLEDRSQLESGPLSSDYLGPQGTFIGVYDGHGGTAASQFVTDNLFSNFKTGCAAEHQGISEKVIRKAFVATEEGFLSLVKKQWLSKPQIASAGTCCLAGIICNGMLYVANAGDSRAVLGRVERATKETLAIQLSAEHNVNIETERDELRSKHPYDSQIVVMKHNVWRVKGLIQVSRSIGDAYLKKAEFNKEPLPYKFRLPETFFKPILSCEPSISMHKLHPDDQFLIFASDGLWEQLSNQEAVDIVSNNPRNGIARRLVKAALREAAKKREMRFSDLQKIEQGVRRHFHDDITVIVVFLNPKLIDNSSLWGSPLSIRGSGHANS. 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04564 346 ProSitePatterns PPM-type phosphatase domain signature. 46 54 IPR000222 GO:0043169
Seca2g04564 346 ProSiteProfiles PPM-type phosphatase domain profile. 9 321 IPR001932 -
Seca2g04564 346 Coils Coil 344 346 - -
Seca2g04564 346 PANTHER PROTEIN PHOSPHATASE 10 319 IPR015655 GO:0004722|GO:0006470
Seca2g04564 346 FunFam Phosphatase 2C family protein 2 331 - -
Seca2g04564 346 Pfam Protein phosphatase 2C 43 290 IPR001932 -
Seca2g04564 346 SUPERFAMILY PP2C-like 21 322 IPR036457 -
Seca2g04564 346 CDD PP2Cc 10 321 IPR001932 -
Seca2g04564 346 SMART PP2C_4 6 319 IPR001932 -
Seca2g04564 346 Gene3D - 5 330 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04564 Seca-Chr2 131766025 131768815 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04564 5 342 PP2C-type Phosphatase Gene Family AT3G51370 68.639 6.79e-173 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04564 K01102 - gmx:100815902 556.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04564 2 131766025 131768815 Seca2g04564 2 131766025 131768815 ECH
Seca8g05444 8 145458879 145462295 Seca2g04564 2 131766025 131768815 PCT