Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04556 ATGTCTCGCCTGACACCCCAACCTCCCAACCCAGCCAACGACAGGCTCCCTTTCTTTAACCAATCCATGGAGCTTGTCCAAGCACCCAGAACCCGAACCCGAACCCGAACCCATCTCTCTCCCACCCTTGGCGAGCTTCTCAAACGCGTGGAAGATGCTCAAAACGACGTCAACACAAGTGCTGAACAACACCACGTTCTCGACCTTTCCTCTTCTTCCTCCTCCACCCTTCCCTCTTATCCATTTTTCCTTTCCTTCAGTAACTTAACATACAGTGTCAAGCTCCGCCGCAAGATGACTCTCTCCTCATGCTTTTCCTCTCACCACAATTCCTCGCCTACAAACCAGGAAACCGAAACCAAACCCAACCGCACCAAGATTCTCCTCAACGAAATCTCCGGCGAGGCCAGAGACGGCGAGATCATGGCCGTTCTCGGCGCCAGCGGCTCCGGCAAGTCAACTTTAATCGACGCACTCGCTAACCGGATTTCTAAAGAGAGCTTAAAAGGAACCTTGACATTAAACGGCGACGTTTTAGAGTCCAGTCTCCTGAAGGTGATTTCTGCTTACGTCATGCAAGATGACCTTCTTTTCCCCATGCTTACCGTGGAAGAGACGCTTATGTTCTCAGCAGAATTCAGACTCCCTCGCTCTCTCTCCAAATCCAAGAAAAAAGCGCGCGTTCAAGCTCTCATCGACCAGCTCGGCCTCCGCACCGCCGCGAAAACCATCATCGGCGACGAAGGTCACCGCGGAGTCTCCGGCGGCGAACGCCGCCGCGTCTCCATCGGAATCGACATCATCCACGATCCAATCCTTTTGTTCCTGGACGAACCAACCTCTGGACTGGACTCCACCAGCGCATTCATGGTGGTGAAGGTATTGCAGCGAATCGCTCAGAGCGGAAGCATCGTCATCATGTCCGTTCATCAACCAAGCTACAGAATCCTCGGGTTGTTAGACCGCCTCATCTTCCTCTCTCACGGCCAAGCCGTCTACAGCGGTTCTCTGGCGAACCTCCCGAGCTTCTTCTCGGAGTTCGGCCATCCTATACCGGAAAACGAGAACCGCACAGAGTTCGCACTGGATCTAATCCGCGAACTGGAAGAAACACCAGGCGGAACCAAAAGCCTAGTGGAGTTCAACAAATCATGGCAGTTAAAAAACAAACAAGTAACTGAAAAATCCATCAACGGACCAACAGCGTCACTGAAGGACGCCATCAGCGCAAGCATTTCAAGGGGGAAATTAGTGTCCGGAGCCAGCGGTAATAACTCACCAACCTCAGTCCCTACCTTCGCCAATCCGTTTTGGATCGAAATGGCGGTTATAGCAAAACGATCTCTAACTAACTCCAGGCGGATGCCTGAAGTATTTGGAATCCGTTTGGGTGCAATTTTAGTTACAGGAATAATCCTGGCCACGATCTTTTGGCGCTTGGACAATTCCTCCAAAGGTGTTGTAGAGCGTTTGGGATTCTTCGCCTTCGCCATGTCAACAACCTTCTACACCTGCGCTGAAGCCATACCGGTTTTCCTCCAAGAGCGTTACATCTTCATGAGAGAAACCGCTTACAACGCTTACCGCCGTTCCTCCTATGTTCTCGCTCACTCCATCATCTCCGTTCCTTCTCTCGTCTTCCTCTCTTTCGCGTTCGCCGCCACCACGTTCTGGGCGGTAGGCCTCGCCGGCGGGATTTCCGGTTTTCTGTTTTACTTCTTCATCATAGTGGCTTCCTTCTGGGCGGGGAGCTCCTTCGTGACGTTCCTCTCAGGGATCGTGCCGCACGTGATGCTTGGTTTTACTGTTGTGGTTGCTATCTTAGCTTACTTCTTACTCTTCAGTGGATTCTTCATCAGTAGGGATAGGATCCCTGAGTATTGGCTATGGTTCCATTACCTGTCTCTGGTGAAGTATCCTTACGAAGGAGTGTTGTTGAACGAGTTCGGTACTCAGCCTCCGAGGTGCTTCGTGAGGGGGACTCAGATGTTTGATAATACGCCACTGGGGAATATTCAGGAGTCGATGAAGGAGTTGCTGTTGAAGGGAATGAGCAGCACGTTGGGGTTGAATATCACAAGCTCAACCTGTGTCGTTACTGGAGAGACGGTACTGAAGCAGCAGGGGATCACGGAGTTCAGCAAGTGGAACTGCTTGTGGATCACCATTGCTTGGGGCTTTCTCTTTAGATTCCTTTTTTACTTGACCCTGCTCTTTGGGAGCAAGAACAAAAGGAGGTAG 2241 0.5141 MSRLTPQPPNPANDRLPFFNQSMELVQAPRTRTRTRTHLSPTLGELLKRVEDAQNDVNTSAEQHHVLDLSSSSSSTLPSYPFFLSFSNLTYSVKLRRKMTLSSCFSSHHNSSPTNQETETKPNRTKILLNEISGEARDGEIMAVLGASGSGKSTLIDALANRISKESLKGTLTLNGDVLESSLLKVISAYVMQDDLLFPMLTVEETLMFSAEFRLPRSLSKSKKKARVQALIDQLGLRTAAKTIIGDEGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLQRIAQSGSIVIMSVHQPSYRILGLLDRLIFLSHGQAVYSGSLANLPSFFSEFGHPIPENENRTEFALDLIRELEETPGGTKSLVEFNKSWQLKNKQVTEKSINGPTASLKDAISASISRGKLVSGASGNNSPTSVPTFANPFWIEMAVIAKRSLTNSRRMPEVFGIRLGAILVTGIILATIFWRLDNSSKGVVERLGFFAFAMSTTFYTCAEAIPVFLQERYIFMRETAYNAYRRSSYVLAHSIISVPSLVFLSFAFAATTFWAVGLAGGISGFLFYFFIIVASFWAGSSFVTFLSGIVPHVMLGFTVVVAILAYFLLFSGFFISRDRIPEYWLWFHYLSLVKYPYEGVLLNEFGTQPPRCFVRGTQMFDNTPLGNIQESMKELLLKGMSSTLGLNITSSTCVVTGETVLKQQGITEFSKWNCLWITIAWGFLFRFLFYLTLLFGSKNKRR. 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04556 746 SMART AAA_5 138 330 IPR003593 GO:0016887
Seca2g04556 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 345 IPR027417 -
Seca2g04556 746 Coils Coil 43 63 - -
Seca2g04556 746 Pfam ABC-2 type transporter 443 649 IPR013525 GO:0016020|GO:0140359
Seca2g04556 746 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 58 734 - -
Seca2g04556 746 FunFam ABC transporter G family member 6 117 344 - -
Seca2g04556 746 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 114 353 IPR003439 GO:0005524
Seca2g04556 746 ProSitePatterns ABC transporters family signature. 253 267 IPR017871 GO:0005524|GO:0016887
Seca2g04556 746 Gene3D - 118 344 IPR027417 -
Seca2g04556 746 Pfam ABC transporter 129 281 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04556 Seca-Chr2 131689760 131692000 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04556 122 313 Calmodulin-binding Proteins AT2G36910 30.102 2.99e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04556 K05681 - gmx:100803426 1112.83