Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04555 ATGGGGAAGGGAGGCCAAGATTATGAGAGAAAAGAGAACACGAGTTCTGAGTCTTCGGATCGTGAAATCTTCAAGGCGTGGTCCAAGGACGTGCGTGAATGCGAGGAACACTTTAAGGTGAGAGTGAAAACGGGGTTGAATCACGACGAGGTTGAGAATCGGCGCAAGATCTATGGCTCGAACGAATTGGAGAAGCACGACGGACAGTCTATTTGGAGTTTGATTCTGGAACAGTTCAATGACACGTTGGTTCGGATTCTTCTCGCCGCTGCCATCATCTCCTTCGTACTTGCTTGGTACGATGGCGAAGAAGGTGGCGAGATGGAGATTACGGCTTTTGTGGAGCCTCTGGTGATATTCCTGATATTGATTGTGAATGCAATCGTTGGGGTATGGCAAGAGAGCAATGCGGAGAAGGCACTTGAGGCCTTGAAGGAGATTCAATCGGAGCACGCCATGGTGATTCGAGATAGCGTGAAAATCCCTAATTTGCCGGCCAAGGATCTTGTGCCTGGTGATATTGTGGAGCTTAAAGTTGGCGATAAGGTGCCTGCAGATATGCGGGTTGTGGCATTGATTAGCTCCACTTTGCGATTGGAGCAGGGTTCCTTGACTGGAGAGAGTGAAGCAGTGAATAAGACTAACAAGCCTGATCCTGAGGATGCTGATATTCAAGGCAAGAGGTGTATGGTTTTCGCGGGGACGACTGTTGTTAACGGGAACTGCATTTGCTTGGTCACTCAGACCGGCATGGATACCGAGATTGGGAAGGTGCATAAGCAGATACACGTAGCGTCGCAGAGTGAGGATGATACCCCCTTGAAGAAGAAGCTCAATGAGTTTGGAGAGAATCTAACCATTATAATTGGGTTGATATGTGCTTTGGTTTGGCTCATCAATGTCAAGTACTTCCTGACCTGGGAGTATGTGGATGGGTGGCCAAGGAACTTCAAGTTTTCATTTGAGAAGTGTACGTATTACTTTGAGATTGCTGTGGCATTGGCTGTGGCTGCCATTCCAGAGGGTTTGCCTGCAGTCATCACGACTTGCCTCGCACTAGGTACTCGAAAGATGGCCCAGAAGAATGCCCTGGTTCGGAAGCTACCAAGCGTGGAAACTCTGGGTTGTACAACTGTGATTTGTTCAGATAAAACTGGTACTTTGACTACGAACCAGATGTCTGTGACAAAACTAGTAGCTATTGGCCATAATGTAGACACCCTGCGAGCCTTCAAGGTGGAAGGAACTACTTACAATCCATCTGATGGTAAAATAGAGAACTGGGTAACGGGTGGATTGGATGCTAATCTTCAGATGATAGCAAAAATAGCTGCTGTCTGTAATGATGCTGGAGTCACACAGTCAGAGCATAAGTTTGTTGCCCATGGAATGCCTACTGAAGCAGCCTTAAAGGTTTTGGTAGAGAAGATGGGTCTTCCTGAAGGATCTAATGATGCACGATCAGCAAGCAAGAATACCTTACTAAGTAAGTTATACTTTTTTTGTCAAAAATCATTTTTGCTAGGTTGTTGTGAATGGTGGAATGAACATGACCGGCGGATTGCAACTCTTGAGTTTGACCGTGATAGGAAGTCAATGGGTGTTATTGTGGACTCTGGTCCAGGGAAAAAGTCACTTCTGGTCAAGGGTGCTGTAGAAAATGTATTGGAAAGAAGCTCTAAAATTCAGTTGCGTGATGGTTCTGTTGTGAATCTGGACAATAATGCAAGGAACCTCATATTACAAGCTCTTCATGAAATGTCAACTAGTGCATTACGCTGTTTGGGATTTGCTTACAAGGATGAGCTCAGTGCATTTAAAAACTACAATGGTAATGATGATCATCCAGCCCACCAGCTTTTGCTTAATCCTTCCAACTATTCATCAATTGAAAGTGAACTTATTTTTGTTGGCTTGGTTGGATTGAGGGATCCTCCTAGGGAGGAGGTATACCAAGCAATTGAAGACTGCAGAGCAGCTGGAATTCGTGTTATAGTTATAACTGGAGACAATAAGAACACTGCTGAAGCTATATGCCGTGAAATAGGTGTATTTGAACCCAATGAAGACATTAGTTCAAAAAGTGTAACTGGTAGAGATTTTATGGAAGTGCGTGATAAAAAAGCCTATTTGAGACAGAGTGGTGGGCTTTTGTTTTCGAGGGCTGAACCTAGGCATAAGCAAGATATTGTGAGGCTGCTCAAAGAGGAAGGAGAGGTGGTGGCCATGACTGGGGATGGTGTTAATGATGCGCCTGCCTTGAAGCTTGCAGACATTGGTGTGGCAATGGGCATTGCAGGGACAGAGGTGGCAAAGGAAGCTTCAGATATGGTACTGGCAGATGATAATTTCAGTACCATTGTAGCAGCTGTTGGTGAAGGTAGATCTATCTACAATAATATGAAGGCTTTTATCAGGTACATGATCTCTTCCAATATTGGTGAGGTTGCTTCCATATTTCTAACAGCTGCACTAGGTATTCCTGAAGGACTGATACCTGTCCAGCTTCTGTGGGTCAATCTTGTCACTGATGGACCCCCTGCAACGGCTTTGGGATTTAATCCTCCAGATAAGGATATAATGAAGAAGCCTCCTCGTCGCAGTGATGACTCACTGATTAATTTGTGGATTTTATTCCGCTATCTGGTTATTGGGATTTATGTTGGATTAGCTACGGTTGGTGTTTTCATTATATGGTATACACATGGTTCCTTCTTGGGTATTGACCTTAGCGGGGATGGGCATACACTCGTCACTTACTCCCAACTTGCCAACTGGGGTCAGTGCTCCTCGTGGAAGAACTTCACTGCTTCTCCCTTCACTGCTGGTGCTAGAACTATTTCTTTTGATAATGATCCCTGTGACTACTTCCAGACTGGTAAAGTGAAAGCTATGACACTGTCTCTCTCTGTGTTGGTAGCCATCGAAATGTTCAACTCTCTTAATGCCCTATCTGAAGATGGAAGTCTTTTGACAATGCCCCCTTGGGTCAACCCTTGGCTTCTTTTGGCAATGTCTGTGTCATTTGGTCTGCACTTTTTGATCTTGTATGTGCCATTCTTATCACAAGTATTTGGCATCGTGCCCCTGAGTTTCAATGAGTGGCTTTTGGTTTTGGCTGTTGCTTTGCCCGTCATTCTAATTGATGAGATTCTGAAATTTGTGGGGAGGTGTACGAGTAGATCTCAAGCATCAAGTGCAAGAAGATCAAAGCAAAAATCAGAGTAG 3228 0.4473 MGKGGQDYERKENTSSESSDREIFKAWSKDVRECEEHFKVRVKTGLNHDEVENRRKIYGSNELEKHDGQSIWSLILEQFNDTLVRILLAAAIISFVLAWYDGEEGGEMEITAFVEPLVIFLILIVNAIVGVWQESNAEKALEALKEIQSEHAMVIRDSVKIPNLPAKDLVPGDIVELKVGDKVPADMRVVALISSTLRLEQGSLTGESEAVNKTNKPDPEDADIQGKRCMVFAGTTVVNGNCICLVTQTGMDTEIGKVHKQIHVASQSEDDTPLKKKLNEFGENLTIIIGLICALVWLINVKYFLTWEYVDGWPRNFKFSFEKCTYYFEIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNALVRKLPSVETLGCTTVICSDKTGTLTTNQMSVTKLVAIGHNVDTLRAFKVEGTTYNPSDGKIENWVTGGLDANLQMIAKIAAVCNDAGVTQSEHKFVAHGMPTEAALKVLVEKMGLPEGSNDARSASKNTLLSKLYFFCQKSFLLGCCEWWNEHDRRIATLEFDRDRKSMGVIVDSGPGKKSLLVKGAVENVLERSSKIQLRDGSVVNLDNNARNLILQALHEMSTSALRCLGFAYKDELSAFKNYNGNDDHPAHQLLLNPSNYSSIESELIFVGLVGLRDPPREEVYQAIEDCRAAGIRVIVITGDNKNTAEAICREIGVFEPNEDISSKSVTGRDFMEVRDKKAYLRQSGGLLFSRAEPRHKQDIVRLLKEEGEVVAMTGDGVNDAPALKLADIGVAMGIAGTEVAKEASDMVLADDNFSTIVAAVGEGRSIYNNMKAFIRYMISSNIGEVASIFLTAALGIPEGLIPVQLLWVNLVTDGPPATALGFNPPDKDIMKKPPRRSDDSLINLWILFRYLVIGIYVGLATVGVFIIWYTHGSFLGIDLSGDGHTLVTYSQLANWGQCSSWKNFTASPFTAGARTISFDNDPCDYFQTGKVKAMTLSLSVLVAIEMFNSLNALSEDGSLLTMPPWVNPWLLLAMSVSFGLHFLILYVPFLSQVFGIVPLSFNEWLLVLAVALPVILIDEILKFVGRCTSRSQASSARRSKQKSE. 1076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04555 1075 Gene3D - 77 1057 - -
Seca2g04555 1075 ProSitePatterns E1-E2 ATPases phosphorylation site. 383 389 IPR018303 -
Seca2g04555 1075 PRINTS P-type cation-transporting ATPase superfamily signature 200 214 - -
Seca2g04555 1075 PRINTS P-type cation-transporting ATPase superfamily signature 660 670 - -
Seca2g04555 1075 PRINTS P-type cation-transporting ATPase superfamily signature 768 780 - -
Seca2g04555 1075 PRINTS P-type cation-transporting ATPase superfamily signature 381 395 - -
Seca2g04555 1075 PRINTS P-type cation-transporting ATPase superfamily signature 638 649 - -
Seca2g04555 1075 PRINTS P-type cation-transporting ATPase superfamily signature 744 763 - -
Seca2g04555 1075 Gene3D - 378 789 IPR023214 -
Seca2g04555 1075 Pfam Cation transporter/ATPase, N-terminus 27 94 IPR004014 -
Seca2g04555 1075 FunFam Calcium-transporting ATPase, putative 127 263 - -
Seca2g04555 1075 SUPERFAMILY Calcium ATPase, transduction domain A 150 261 IPR008250 -
Seca2g04555 1075 SMART Cation_ATPase_N_a_2 25 99 IPR004014 -
Seca2g04555 1075 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 391 645 - -
Seca2g04555 1075 Gene3D - 391 645 IPR023299 GO:0000166
Seca2g04555 1075 SUPERFAMILY HAD-like 379 848 IPR036412 -
Seca2g04555 1075 Gene3D - 44 265 - -
Seca2g04555 1075 Pfam Cation transporting ATPase, C-terminus 829 1055 IPR006068 -
Seca2g04555 1075 SFLD C1.7: P-type atpase like 362 796 - -
Seca2g04555 1075 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 808 1062 - -
Seca2g04555 1075 Pfam E1-E2 ATPase 147 361 - -
Seca2g04555 1075 FunFam Calcium-transporting P-type ATPase, putative 640 789 - -
Seca2g04555 1075 SFLD p-type atpase 362 796 IPR044492 -
Seca2g04555 1075 SUPERFAMILY Calcium ATPase, transmembrane domain M 25 1058 IPR023298 -
Seca2g04555 1075 MobiDBLite consensus disorder prediction 1 21 - -
Seca2g04555 1075 Pfam haloacid dehalogenase-like hydrolase 378 758 - -
Seca2g04555 1075 NCBIfam HAD-IC family P-type ATPase 320 402 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g04555 1075 NCBIfam HAD-IC family P-type ATPase 118 308 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g04555 1075 NCBIfam HAD-IC family P-type ATPase 718 825 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Seca2g04555 1075 PANTHER CALCIUM-TRANSPORTING ATPASE 27 1067 - -
Seca2g04555 1075 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 238 411 - -
Seca2g04555 1075 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 388 642 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04555 Seca-Chr2 131676558 131682948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04555 1 1075 Primary Pumps ATPases(2) AT1G07670 79.368 0.0 1740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04555 K01537 - gmx:100788807 1922.9