Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04531 ATGCTTTTGTCATATATGCTCTTCTCTTCTAAAACTATTTTCTTTGTTATGTTTGCAGACAGAATTCTCAGTAAAATGGGTGAAGGAACTTTTGGCCAAGTCTTGGAATGTTTTGATAATGAAAAGAAAGAAGCTGTAGCAATTAAAGTTGTTCGCTCCATAAATAAATATCGTGAGGCTGCAATGACTGAAATCGATGTCTTGCTCAGGCTAGCCAGATATGATGTTGAAGGTGCACGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGTATTGTATTTGAGAAGCTTGGACCAAGCTTATACGATTTTCTCCGCAAAAACAGCTATCGTTCTTTTCCCATTGATCTTGTTCGGGAGTTTGGCAGACAACTTTTGGAGTCTGTAGCATTTATGCATGATTTATGCTTGATTCACACTGATTTGAAGCCAGAGAATATTCTTCTTGTCTCATCGGAATTTATTAAAGTGCCAGACTACAAGGTATCATCCTCAAAAGATGGCTCCTATTTTAAGAATCTACCCAAGTCAAGTGCCATTAAGCTCATTGATTTTGGGAGTACAACATTTGAACATCAGGATCATAGTTATGTGGTGTCAACAAGACACTATCGTGCTCCGGAAGTTATCTTAGGTCTTGGGTGGAACTATCCTTGTGATCTCTGGAGTGTGGGCTGCATATTGGTCGAACTCTGCTCTGGTGAGGCACTTTTCCAAACACACGAGAACTTGGAACATCTTGCCATGATGGAGAGAGTGTTAGGGCCACTACCTTCCCATATGGCGGTCAGGGCTGATCGGCGAGCTGAGAAGTATTTTAAAAGAGGTGCACGGTTAAGTTGGCCTGATAGTTCAACTTCAAGAGAAAGCATGAGGGCAGTATGGAAATTGCCACGTTTGCCGAACCTTATAATGCAGCATGTTGATCATTCTGCTGGTGAGTTGATTGACCTCTTGCAAGGGCTCCTAAGGTATGACCCTGCAGAACGGCTTAAAGCAAGAGAAGCATTAAGACACCCCTTCTTCACAAGAGATTCTAAAAGATATGGTTACCCTTTATAA 1074 0.4106 MLLSYMLFSSKTIFFVMFADRILSKMGEGTFGQVLECFDNEKKEAVAIKVVRSINKYREAAMTEIDVLLRLARYDVEGARCVQIRNWFDYRNHICIVFEKLGPSLYDFLRKNSYRSFPIDLVREFGRQLLESVAFMHDLCLIHTDLKPENILLVSSEFIKVPDYKVSSSKDGSYFKNLPKSSAIKLIDFGSTTFEHQDHSYVVSTRHYRAPEVILGLGWNYPCDLWSVGCILVELCSGEALFQTHENLEHLAMMERVLGPLPSHMAVRADRRAEKYFKRGARLSWPDSSTSRESMRAVWKLPRLPNLIMQHVDHSAGELIDLLQGLLRYDPAERLKAREALRHPFFTRDSKRYGYPL. 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04531 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672|GO:0006468
Seca2g04531 357 SUPERFAMILY Protein kinase-like (PK-like) 22 350 IPR011009 -
Seca2g04531 357 ProSiteProfiles Protein kinase domain profile. 20 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04531 357 SMART serkin_6 20 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04531 357 CDD PKc_CLK 21 346 - -
Seca2g04531 357 Pfam Protein kinase domain 23 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04531 357 Gene3D Phosphorylase Kinase; domain 1 21 100 - -
Seca2g04531 357 FunFam Serine/threonine-protein kinase AFC2 96 346 - -
Seca2g04531 357 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 21 350 - -
Seca2g04531 357 Gene3D Transferase(Phosphotransferase) domain 1 74 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04531 Seca-Chr2 131072695 131078852 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04531 23 346 Core Cell Cycle Gene Families AT1G76540 27.003 2.28e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Seca2g04531 Pkinase 5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04531 K08287 - gmx:100808061 645.195