Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04526 ATGCTTCTCTCTTGTCCACAACAAAGAACCTTTGAACCTGTTGAATTTGAGTGCAAGACCTGTAACCGCAAGTTCCCTTCTTTTCAAGCCCTTGGTGGCCACAGGGCTAGCCACAAGAGGGTGAAACTTGATGGTGAAGAATTACTCAAACAACAAAATAAACCCAAAATGCATGAGTGTTCTATTTGTGGCATGGAATTCTCTTTAGGCCAAGCACTTGGAGGTCACATGAGAAAGCACAGAGCTTTAATCAACCAAGGGATTTCTTCCATCAACCAAGTCATTGCAAAAATCCCAATTCTCAAGAGATCCAATAGTAAGAGGGTTATGTGCTTGGACTTGGACTTGAACTTGACACCTCTTGAGAATGACTTGATGTCTGGAAACAAATCACCCTTAGTTCCACTTTCCATGAAGAGACAGAGAGATATGGGAGAACGGTTAGAGATAGAGAGCATAGATTTGGCAAATTGTCTAATGCTGCTCTCTCATCCTCCCCAAGAAAGCAAGAAAAAACCAGACAGAAAAAGTTTTGTGCCTGTGGAATTTGAGTGCAAAACTTGCAACCGCAAATTCCCTTCTTTTCAAGCACTGGGTGGCCACAGGGCAAGCCACAAAAGATCAAAACTTGATGGGGATGAAGATCTCAAAGCACATGCTACATCTCTTAGCTTAGGAAATAAACCCAAAACACATGAGTGCTCCATTTGTGGACAAGAATTCTCTCTTGGACAGGCACTTGGAGGCCACATGAGAAGACACAGAGCTGCCATCAATGAAGAATTTTCTTCAATAAAACCTGTTCCTGTTAAAGTTCCAGTTTTTAATGGATCCAATAACAGATCAACAGGGGTTATGTGCTTGGACTTGAACTTAACCCCACTGCAGAATGACTTGAAGTTACTGTTTGGAAATATGGCACCAAATGTTGATGTCTTGGTCTGA 945 0.4201 MLLSCPQQRTFEPVEFECKTCNRKFPSFQALGGHRASHKRVKLDGEELLKQQNKPKMHECSICGMEFSLGQALGGHMRKHRALINQGISSINQVIAKIPILKRSNSKRVMCLDLDLNLTPLENDLMSGNKSPLVPLSMKRQRDMGERLEIESIDLANCLMLLSHPPQESKKKPDRKSFVPVEFECKTCNRKFPSFQALGGHRASHKRSKLDGDEDLKAHATSLSLGNKPKTHECSICGQEFSLGQALGGHMRRHRAAINEEFSSIKPVPVKVPVFNGSNNRSTGVMCLDLNLTPLQNDLKLLFGNMAPNVDVLV. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04526 314 SMART c2h2final6 16 38 IPR013087 -
Seca2g04526 314 SMART c2h2final6 183 205 IPR013087 -
Seca2g04526 314 SMART c2h2final6 58 80 IPR013087 -
Seca2g04526 314 SMART c2h2final6 232 254 IPR013087 -
Seca2g04526 314 SUPERFAMILY beta-beta-alpha zinc fingers 16 80 IPR036236 -
Seca2g04526 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Seca2g04526 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 16 43 IPR013087 -
Seca2g04526 314 ProSitePatterns Zinc finger C2H2 type domain signature. 234 254 IPR013087 -
Seca2g04526 314 ProSitePatterns Zinc finger C2H2 type domain signature. 185 205 IPR013087 -
Seca2g04526 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 183 210 IPR013087 -
Seca2g04526 314 ProSitePatterns Zinc finger C2H2 type domain signature. 18 38 IPR013087 -
Seca2g04526 314 Pfam C2H2-type zinc finger 16 40 - -
Seca2g04526 314 Pfam C2H2-type zinc finger 58 82 - -
Seca2g04526 314 Pfam C2H2-type zinc finger 232 256 - -
Seca2g04526 314 Pfam C2H2-type zinc finger 183 207 - -
Seca2g04526 314 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Seca2g04526 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 232 254 IPR013087 -
Seca2g04526 314 SUPERFAMILY beta-beta-alpha zinc fingers 183 254 IPR036236 -
Seca2g04526 314 Gene3D Classic Zinc Finger 14 80 - -
Seca2g04526 314 Gene3D Classic Zinc Finger 180 254 - -
Seca2g04526 314 PANTHER ZINC FINGER PROTEIN ZAT5 139 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04526 Seca-Chr2 131049481 131054629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04526 138 312 C2H2 Transcription Factor Family AT2G37430 45.556 1.11e-42 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca2g04526 zf-C2H2_6 1.1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04526 - - aprc:113870747 386.726