Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04522 ATGGTCATAATGCGACAGTATTTATGTAGTAGGGCTGGTATGAGGGACAAAAAGCATTTGATTAGGTTAGGTCGGAAAAAGGAACACAGACCTCTTACCCGTACCAATTGTCAAGCTAAGTTGAGAGTTAGGTTTGATTACAAGACGGGTAAATGGAAGGTTGTTTCATTTGAAGAATCTCACAACCATGATTTAACCCCTGTAAAGTTTGTACCTCTAATTCGTAATTATCGGGGATTGACTTATGGGGACAAAACCCAAGTGGATGCATTACATTCTCATGGCATTAGGCCTTGCCAGATTATGGGTTTTCTTGTTGATAAAAAAGGAGGGTATAGAAATGTTGGATTTTCAAAGAAAGATTTGTACAACTACATAGATGAGGTTAAGCGTGGTAAGATAAAAAATGGGGATGTTGTTGTTGGCTTAAGTTATTTGCAAGGAAAGGCGGATAATAATCCAATGTTTTTTTTCAAGATTTTTATGTTCTGA 492 0.3699 MVIMRQYLCSRAGMRDKKHLIRLGRKKEHRPLTRTNCQAKLRVRFDYKTGKWKVVSFEESHNHDLTPVKFVPLIRNYRGLTYGDKTQVDALHSHGIRPCQIMGFLVDKKGGYRNVGFSKKDLYNYIDEVKRGKIKNGDVVVGLSYLQGKADNNPMFFFKIFMF. 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04522 163 PANTHER OS01G0519700 PROTEIN 2 160 - -
Seca2g04522 163 Pfam FAR1 DNA-binding domain 2 66 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04522 Seca-Chr2 130981235 130981726 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca2g04522 FAR1 2.5e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04522 - - ccaj:109794460 221.09