Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04510 ATGCAGGGACCCCGGGATGATATTTATTTAGGTCTAGAACATTCAGCCAGTTGGGGTTTTAGGTTACAACAGGTGCTGTGTGAGGGTTTTACGGATCCTCCTCGTTCACGAACTAACTCCCTTCAACTCCAAGTTTTGTTGTTGTTGTTGGGTTGGGTGATTATGGCTTTTTTCTCTGGAGTTCAACGCTTCATTCGCCACTCCCCACTTCTTCACTCCATTCGTTTCAGTTCAACTCTCACTTCCCCCAAACTTTTCGTCAGCGGTCTTTCAAGACTGACAACAGATCAAAAACTTACAGAAGCATTTGCTCCTTTTGGGCAGCTGATGGAAGCTAAGGTGATAACTGATAGAGTGTCTGGAAGATCGAAGGGTTTTGGTTTTGTAACTTATGAAACCATAGAAGAAGCTGAAAAGGCAAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGAGAGCCCAGACCTCCTCAGCAATCACAGTCTCAGCCCTCTGAAACAGGTTTCACAGTTAACAAAACAATTGGTTGGTGTGGTTGA 570 0.4368 MQGPRDDIYLGLEHSASWGFRLQQVLCEGFTDPPRSRTNSLQLQVLLLLLGWVIMAFFSGVQRFIRHSPLLHSIRFSSTLTSPKLFVSGLSRLTTDQKLTEAFAPFGQLMEAKVITDRVSGRSKGFGFVTYETIEEAEKAREGMNAKFLDGWVIFVDPAKPREPRPPQQSQSQPSETGFTVNKTIGWCG. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04510 189 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 85 151 IPR000504 GO:0003723
Seca2g04510 189 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 83 161 IPR000504 GO:0003723
Seca2g04510 189 SMART rrm1_1 84 157 IPR000504 GO:0003723
Seca2g04510 189 MobiDBLite consensus disorder prediction 160 181 - -
Seca2g04510 189 Gene3D - 74 173 IPR012677 -
Seca2g04510 189 SUPERFAMILY RNA-binding domain, RBD 82 179 IPR035979 GO:0003676
Seca2g04510 189 PANTHER NUCLEOLAR PROTEIN 8 73 188 - -
Seca2g04510 189 FunFam RNA binding protein 71 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04510 Seca-Chr2 130789106 130792868 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04510 85 176 Eukaryotic Initiation Factors Gene Family AT3G16380 37.895 8.68e-13 63.9