Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04508 ATGACTTCATTCTTGAAGCCAGAGAATGCCCTCAAGAGGGTGGAAGAATTAATCAATGTTGGTCAGAAGCAGGATGCTTTGCAGACTCTTCATGACCTTATTACTTCGAAAAGATACAGAGCATGGCAGAAGACACTTGAAAGGATTATGTTCAAGTATGTAGAACTGTGTGTAGACATGCGTAAAGGACGGTTTGCAAAGGATGGTCTCATTCAGTATCGAATCATATGTCAGCAAGTGAATGTTAGTTCGCTTGAGGAGGTGATCAAGCATTTCATGCACCTATCCACTGAGAAAGCTGAACAAGCTCGTAGCCAGGCTCAGGCATTAGAAGAAGCCTTGGATGTTGATGACTTAGAGGCTGATAAAAGGCCAGAGGACTTGATGCTAAGCTATGTCAGTGGTGAGAAAGGAAAGGACAGGTCCGACAGGGAGCTTGTTACCCCATGGTTTAAATTCCTATGGGAAACTTACAGGACAGTCCTTGAAATATTACGGAACAACTCAAAATTGGAATCCTTATATGCTATGACAGCCCATCGAGCCTTCCAGTTCTGCAAGCAATATAAACGAACAACAGAATTTCGAAGACTTTGCGAGATCATAAGAAACCATTTAGCCAATCTTAATAAATATCGGGACCAACGAGACCGACCTGATCTTTCTGCTCCTGAGAGCTTGCAACTATATCTTGATACAAGATTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCCGATCAGTTGAAGATATACATGGACTGATGTGCATGGTCAAGAAAGTCCCTAAGCCATCCTTGATGGTTGTTTACTATGTTAAGCTGACAGAAATATTTTGGATATCATCAAGTCATCTATATCATGCATATGCATGGTTCAGGCTCTTTTTATTACAAAAAAGCTTCAATAAAAATCTTAGTCAGAAGGATTTGCAATTAATAGCATCATCTGTTGTTCTGGCTGCACTTTCAGTGCCACCTCATGATCACACTCATGGTGCATCTCATTTGGAATTGGAGCATGAAAAGGAGAGAAATTTGAGGATGGCCAATCTTATTGGCTTTAATCTTGAAACAAAACCTGAGAGCAGAGAAGTGCTCTCGAGGTCATCACTTCTTGCTGAACTGGCATCGAAGGGTGTGATGTCTTGTGTAACTCAGGAAGTGAAGGACATATACTATCTTCTGGAACATGAATTTCTCCCCTCAGATCTTGCACTAAAAGTGCTGCCCTTGTTAACTAAAATTTCAAAATTAGGGGGCAAGCTTTCCACCGCTTCATCTGTTCCAGAGGTTCATTTGTCTCAGTATGTACCAGCACTGGAAAAGCTAGCTACCTTGAGGTTGCTACAGCAGGTGTCTAATGTGTACAAGACAATGAAGATTGAAACCTTATCTGGGATGATCCCCTTCTTCGATTTTTCTGTAGTGGAAAAGATTTCTGTGGATGCTGTTAAGCAGAAGTTTGTATCGATGAAAGTTGACCACATGAAAAATGTTGTCATTTTCTGTAAAATGAATCTTGAGTCTGATGGCTTAAGGGATCACTTGGCAAATTTTGCTGAACAATTGAATAAGGCAAGACAAATGATTTATCCTCCTGATACGAAACCATCTAAACTTGGAGCTTTGCTTCCAACTTTGACAGAGGTTGTCGCCAAAGAACACAAGAGGCTCCTTGCTCGAAAATCGATTATCGAGAAGAGGAAAGAAGAACAAGAACGACAGCTTCTTGAAATGGAACGTGAGGAGGAATCAAAGAGATTAAAACTACAAAAGATAACTGAAGAAGCAGAGCAAAGAAGGCTTGCAACTGAGTATGAGAGGATGAAGAATCAGAGAATCCTCAGGGAAATAGAGGAAAGAGAAAATGAAGAAGCTCAAGCTTTACTTCAGGAAGCTGAGAAGCGAATCACTAAGACGAAAGGTAAAAGGAGGCCAATCATAGAGGGGGACAAAATGACCAAGCAGGCATTGATGGAGTTGACATTGACTGAACAACTCCGGGAAAGACAGGAGATGGAAAAGAAACTGCAAAAATTAGCTAAAACCATGGATTATCTGGAAAGAGCAAAAAGAGAGGAGGCTGCTCCCCTGATTGAAGCTGCATATCAACAGCGCCTAGTGGAAGAGAGGATTCTTCATGAGCGTGAGCAACAACAAGAGGTTGAACTGAGCAAACAGAGGCACGAGGGAGACCTTAAGGAGAAGGAGAGGCTTGCTCGAATGATGAGCAATAAAGAGATATATCAAGCGAGAGTTGTCAGTCATCGCCAAGCAGAATTTAACAGATTGAAGAGAGAAAGGGAGGAGCGAATCTCTAGGATTTTACAGTCCAGGAGGCAGGAAAGAGAAAAAATGAGGAAGTTGAAGTTTTATCTTAAGTTAGAAGAAGAGAGACAACAAAAATTGCATGAGGAAGAAGAAGCTCGGAAGCGTGAAGAGGCTGAGAGGAAGAAGAAGGAAGAGGCTGAACGCTTAGCAAAATTGGCTGAGATAGCTGAAAAGCAGAGGCAAAGAGAGCGGGAACTTGAAGAAAAGGAGAAACAAAGGAGAGAAGCATTGTTGGGTAAATCTGCTGAACCAGCTTTTAAGCCTTCTGAGCCTCCTGCACGTCCATTGGATTCTGCACCAGCTGCAGCTGCCGCAGCCCCAGCTCCAGCTCCAGGTAAATACGTCCCTAAGTTCAGGAGAGAGAGAACTGAAAGCACAGCAGCTGTTCCTCCTCCAGAAACAGATCGTTGGAATAACAGCAGCACCAGGCCAGATGGTGGTGACAGGTGGCGTAGTGATGATCGCAGAACTGCATTTGGTTCTGGTTCTAGGTCATCTTCTACTTGGTCATCTTCCAGGAATCGTGATCGTTGA 2883 0.428 MTSFLKPENALKRVEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLESLYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKIATELELWQEAFRSVEDIHGLMCMVKKVPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDHTHGASHLELEHEKERNLRMANLIGFNLETKPESREVLSRSSLLAELASKGVMSCVTQEVKDIYYLLEHEFLPSDLALKVLPLLTKISKLGGKLSTASSVPEVHLSQYVPALEKLATLRLLQQVSNVYKTMKIETLSGMIPFFDFSVVEKISVDAVKQKFVSMKVDHMKNVVIFCKMNLESDGLRDHLANFAEQLNKARQMIYPPDTKPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLKLQKITEEAEQRRLATEYERMKNQRILREIEERENEEAQALLQEAEKRITKTKGKRRPIIEGDKMTKQALMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERILHEREQQQEVELSKQRHEGDLKEKERLARMMSNKEIYQARVVSHRQAEFNRLKREREERISRILQSRRQEREKMRKLKFYLKLEEERQQKLHEEEEARKREEAERKKKEEAERLAKLAEIAEKQRQRERELEEKEKQRREALLGKSAEPAFKPSEPPARPLDSAPAAAAAAPAPAPGKYVPKFRRERTESTAAVPPPETDRWNNSSTRPDGGDRWRSDDRRTAFGSGSRSSSTWSSSRNRDR. 961
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04508 960 Coils Coil 615 649 - -
Seca2g04508 960 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 933 IPR027512 GO:0005852
Seca2g04508 960 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Seca2g04508 960 MobiDBLite consensus disorder prediction 806 960 - -
Seca2g04508 960 Coils Coil 669 699 - -
Seca2g04508 960 Coils Coil 732 752 - -
Seca2g04508 960 Gene3D UVR domain 217 267 - -
Seca2g04508 960 Gene3D - 352 510 - -
Seca2g04508 960 Gene3D - 268 342 - -
Seca2g04508 960 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Seca2g04508 960 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Seca2g04508 960 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Seca2g04508 960 Coils Coil 798 859 - -
Seca2g04508 960 Pfam PCI domain 373 508 IPR000717 -
Seca2g04508 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 951 IPR027512 GO:0005852
Seca2g04508 960 Coils Coil 561 602 - -
Seca2g04508 960 Coils Coil 93 120 - -
Seca2g04508 960 MobiDBLite consensus disorder prediction 806 863 - -
Seca2g04508 960 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Seca2g04508 Seca-Chr2 130767656 130775404 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04508 1 958 Eukaryotic Initiation Factors Gene Family AT4G11420 71.472 0.0 1316
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04508 K03254 - gmx:100803796 1506.12