Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04484 ATGAACCACTGTGTTCCAGATTTTGAAATCCAAATAGATGACCAAGACTACCCGTTATCCATGCCTTCAGCTTCAGGAACAAAGAAACCCTCCATTGCAGACGACGACATCATGGAGCTGCTATGGCAAAACGGCCAGGTCGTGATGCAAAGCCAAAACCAGCGTCCTCTGAGAAAACCGCCGCCGGCGAGAAACTCCGACGATGCTACTCTCGCCGGAACATCCAGGGAGGTAGAAAACTACAACAACCAACATCTCTTTATGCAAGAAGGCGAAATGGCTGCGTGGCTTCACTATCCAATCGACAACGATCCTTCTTCTTTGGATCAGAGCTTCAGCGCCGATTTCCTCTACCCGCCGCCGACGGTTAACAACAACAGTGCCATGCAAACTCCTCCCCATACGTCTCAACTCACGGAGCTCCGGCAGCCGTCGATAACGGTGGCGGCTCCTCGACCTCCGATTCCGCCGCCGAGGAGGCCGCCGAGGACGCAGAACTTCGCGTGCTTATGGAAGCACAATGCGAGAGCCGAGCCAGGACCGTCGTCGATTTCGAGGACCGTCGCGAGGGAATACACGGTGGTGGATTCGTGCGACACGCCTGCCGCGGCGGCGCCTGCTCCGGGAGCGGCGAATTCGATGGTTTCTGAGACTGTAAGAAGCTCGGCGGAGCCTACGGAAGGAGCCACCCCTGGCGTACCTTCGACGACGTGTGACGAACCGGGCGGTTCGAGTAGCAGCGGCGAACCGGTTCAGAAGGTGGCGGCGCAGGACCGGAAGCGGAAGGGAAGGGAAGCAGAGGAATGGGAGTGTCAAAGCGAGGATGTTGATTTTGAATCTGCGGAAGGAAAAAAACAAGTTCATGGATTGTCATCTACAAAGAGATCTCGTGCTGCTGAGGTCCATAATCTCTCAGAGAGGAGGCGACGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGTTGTAATAAGTCTGATAAAGCTTCAATGCTAGATGAAGCAATTGAATACTTGAAGTCGCTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTATATGCCCCCAATTGGAATGGGGATTGGAATGGGTATGGGTATGGAAATGGGAATGAACAGACCAGTAATGCCATTTCCCAATATGTTACCTGGTTCGGCTTTGCCAGCAGCTGCTCATTTGGGATCAAGGTTCGGTATGCCTCCTTTCCACATGCCACATGTTCCTGCACCAGATTCATCTAGAATGCAAGCAGCAAATCGAACAGATAATAATATCCTCACCTCAAGTGGTACACCTGATCCAAATCAGTCACGTATCCCAAACTTCACCGATACTTATCAACAATACCTTGGTCCCCACCAGATGCAGTTTCAATTAATGCAGAAACAGGCAATGAACCAACCAAATGTTAACAAGCCAAGTACCAGTAAGGGCCCTGAGAATCCAGAAAACCATCAGTCAGGTGAATTACTTTTATCTTACAATTGCACAAGATTTGGTTAG 1554 0.5071 MNHCVPDFEIQIDDQDYPLSMPSASGTKKPSIADDDIMELLWQNGQVVMQSQNQRPLRKPPPARNSDDATLAGTSREVENYNNQHLFMQEGEMAAWLHYPIDNDPSSLDQSFSADFLYPPPTVNNNSAMQTPPHTSQLTELRQPSITVAAPRPPIPPPRRPPRTQNFACLWKHNARAEPGPSSISRTVAREYTVVDSCDTPAAAAPAPGAANSMVSETVRSSAEPTEGATPGVPSTTCDEPGGSSSSGEPVQKVAAQDRKRKGREAEEWECQSEDVDFESAEGKKQVHGLSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPPIGMGIGMGMGMEMGMNRPVMPFPNMLPGSALPAAAHLGSRFGMPPFHMPHVPAPDSSRMQAANRTDNNILTSSGTPDPNQSRIPNFTDTYQQYLGPHQMQFQLMQKQAMNQPNVNKPSTSKGPENPENHQSGELLLSYNCTRFG. 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04484 517 Pfam Helix-loop-helix DNA-binding domain 301 347 IPR011598 GO:0046983
Seca2g04484 517 FunFam Basic helix-loop-helix transcription factor 292 355 - -
Seca2g04484 517 PANTHER TRANSCRIPTION FACTOR PIF3 25 177 IPR044273 GO:0003700|GO:0006355
Seca2g04484 517 CDD bHLH_AtPIF_like 297 360 IPR047265 -
Seca2g04484 517 MobiDBLite consensus disorder prediction 50 69 - -
Seca2g04484 517 MobiDBLite consensus disorder prediction 440 459 - -
Seca2g04484 517 MobiDBLite consensus disorder prediction 254 269 - -
Seca2g04484 517 MobiDBLite consensus disorder prediction 484 509 - -
Seca2g04484 517 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 295 363 IPR036638 GO:0046983
Seca2g04484 517 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 297 346 IPR011598 GO:0046983
Seca2g04484 517 Gene3D - 292 355 IPR036638 GO:0046983
Seca2g04484 517 SMART finulus 303 352 IPR011598 GO:0046983
Seca2g04484 517 MobiDBLite consensus disorder prediction 204 295 - -
Seca2g04484 517 MobiDBLite consensus disorder prediction 214 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04484 Seca-Chr2 130470495 130476199 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04484 1 352 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 41.711 8.88e-64 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca2g04484 HLH 1.8e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04484 - - gmx:100797225 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04484 2 130470495 130476199 Seca2g04484 2 130470495 130476199 ECH
Seca8g05520 8 146558300 146563809 Seca2g04484 2 130470495 130476199 PCT