Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04483 ATGAAGGACAACATGAAAGTCATGGAAGCTTGTCAGCTAACAGCACTTGTTGTTGATGATGACACAATGGTCCGAATGGTTCATGGAAAGATGTTGAGCAGTGTTGGAGTGAAAAATCAAGTTGTGGAAAATGGCAAAGAAGCCATTGACATTCACCATTCTGGACAAAGTTTTGACTTGATTCTAATGGATATGGACATGCCTATTATGAATGGCATTGAGGCAACAAAGGAACTTCGGTCGATGGGAATTCATAGTATGATCGCTGGTGTATCAGCAAACTGTGTGGAAGCACATAAACGAGCATTTATGGAAGCAGGATTGGATGACCACTTGGAGAAGCCTTTGACCATTGCTAAGCTTACATCCATCATTCACAAGATCAAGGACGGAGCTGAGATTTTTTCATTACAAGATCATCATAACATATTAAAAAGTTGTAATGTCTCACAATAA 456 0.3947 MKDNMKVMEACQLTALVVDDDTMVRMVHGKMLSSVGVKNQVVENGKEAIDIHHSGQSFDLILMDMDMPIMNGIEATKELRSMGIHSMIAGVSANCVEAHKRAFMEAGLDDHLEKPLTIAKLTSIIHKIKDGAEIFSLQDHHNILKSCNVSQ. 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04483 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 8 132 - -
Seca2g04483 151 Pfam Response regulator receiver domain 16 125 IPR001789 GO:0000160
Seca2g04483 151 CDD REC_hyHK_CKI1_RcsC-like 16 125 - -
Seca2g04483 151 Gene3D - 9 142 - -
Seca2g04483 151 ProSiteProfiles Intein N-terminal splicing motif profile. 95 144 IPR006141 GO:0016539
Seca2g04483 151 ProSiteProfiles Response regulatory domain profile. 14 129 IPR001789 GO:0000160
Seca2g04483 151 SUPERFAMILY CheY-like 13 130 IPR011006 -
Seca2g04483 151 SMART REC_2 13 125 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04483 Seca-Chr2 130449230 130449986 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04483 13 131 Response Regulator Gene Family AT3G04280 44.628 3.43e-29 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g04483 Response_reg 1.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04483 - - qsu:112028165 155.606