Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04482 ATGGAATCTCAAAACAATAACCGAATGGCACCTCAAAACTTGGGCAGCCAGTTAACAGCACTTGTTGTAGATGACAATAAAATCAACCGAAAGATTCATCAACAACTGTTGAATAGTGTTGGAGTGAAAAATCAAGGAGTGAAAAATGGGAAAGAAGCGGTGGACATTCATTGGGATGGACAAAGATTTGACATCATTCTCATGGACATGGATATGCCTATCATGAATGGCATTGAGGCAACAAAAAAACTTCGGTCAATGGGCATTCATAGCATGATTGTTGGAGTGTCATCACGCTCTATGGAAGCGGAAATAAACAAGTTCATGGAAGCAGGGCTGAATGACTACAAAGAGAAACCCTTGGATGCTCAAAAACTTAATTCAATTCTTGAAATGATCAAACCCAATTGA 411 0.3917 MESQNNNRMAPQNLGSQLTALVVDDNKINRKIHQQLLNSVGVKNQGVKNGKEAVDIHWDGQRFDIILMDMDMPIMNGIEATKKLRSMGIHSMIVGVSSRSMEAEINKFMEAGLNDYKEKPLDAQKLNSILEMIKPN. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04482 136 CDD REC_hyHK_CKI1_RcsC-like 21 130 - -
Seca2g04482 136 SUPERFAMILY CheY-like 18 131 IPR011006 -
Seca2g04482 136 Pfam Response regulator receiver domain 21 130 IPR001789 GO:0000160
Seca2g04482 136 PANTHER TWO-COMPONENT RESPONSE REGULATOR 12 133 - -
Seca2g04482 136 ProSiteProfiles Response regulatory domain profile. 19 134 IPR001789 GO:0000160
Seca2g04482 136 Gene3D - 1 135 - -
Seca2g04482 136 SMART REC_2 18 130 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04482 Seca-Chr2 130441654 130442729 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04482 21 130 Response Regulator Gene Family AT3G04280 48.214 5.66e-31 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g04482 Response_reg 1.2e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04482 - - gmx:100794931 195.282