Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04471 ATGCCACCCAGCTTCGTATTTGAACCCCCCAGCGACGAAGAACTCGAACACTCCGAACCCGAAGAAGAAGAAGAAGACAACGACGAAGAAGAAGCTGAGCCTGAATCTGAATCAGAATCAGACGAAGAGCGCAAAGAAGCGCGAGTTTCGAAGAAGAAAACACAGTCTCCATGGGACTTTGCTAAATACACGGAATCAGTGGCCGAGGAACACGCTCGCAGGAGCACAACCTCGGTGGATGAGAAAATTTCCAAAGCCCTCAAACAACGTTCCACGCCGCTCGTTGCAGTGCCCGACCCAGAAGACGATAGCTCCGAGTCCGAACCCGATAAACAAGAAGATTACAGACCGGAAGAGGAAGATGAAGAAGAGGGTAATGTTGATCACAAGTCCTTTTTTGCTCCTTCTGATGGGGCCTCTTTCCATGCTGATTCCTTCTTGCAGCTCAATTTGTCTCGCCCTTTGCTCCGGGCTTGTGAGGCCTTGGGGTATGCTAAACCAACACCAATTCAGGCCGCTTGTATACCATTAGCATTGACTGGTCGCGATATATGTGGAAGTGCCATTACTGGGTCTGGAAAGACAGCTGCATTTGCACTGCCCACTTTAGAGAGGTTGTTGTTCCGTCCAAAACGTGAGCATGCAATAAGGGTCCTTATACTTACTCCAACCAGAGAGTTGGCAGTCCAAGTTCACAGTATGATAGAGAAGCTTGCTCAGTTTACTGATATAAGGTGTTGCCTGGTTGTTGGGGGTCTGTCAACGAAGGTTTGA 774 0.4897 MPPSFVFEPPSDEELEHSEPEEEEEDNDEEEAEPESESESDEERKEARVSKKKTQSPWDFAKYTESVAEEHARRSTTSVDEKISKALKQRSTPLVAVPDPEDDSSESEPDKQEDYRPEEEDEEEGNVDHKSFFAPSDGASFHADSFLQLNLSRPLLRACEALGYAKPTPIQAACIPLALTGRDICGSAITGSGKTAAFALPTLERLLFRPKREHAIRVLILTPTRELAVQVHSMIEKLAQFTDIRCCLVVGGLSTKV. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04471 257 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 144 172 IPR014014 GO:0003724
Seca2g04471 257 MobiDBLite consensus disorder prediction 64 87 - -
Seca2g04471 257 MobiDBLite consensus disorder prediction 1 134 - -
Seca2g04471 257 MobiDBLite consensus disorder prediction 41 55 - -
Seca2g04471 257 MobiDBLite consensus disorder prediction 101 125 - -
Seca2g04471 257 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 175 257 IPR014001 -
Seca2g04471 257 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 106 256 - -
Seca2g04471 257 MobiDBLite consensus disorder prediction 14 40 - -
Seca2g04471 257 Pfam DEAD/DEAH box helicase 168 255 IPR011545 GO:0003676|GO:0005524
Seca2g04471 257 Gene3D - 103 257 IPR027417 -
Seca2g04471 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 256 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04471 Seca-Chr2 130080319 130082518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04471 139 257 Eukaryotic Initiation Factors Gene Family AT5G11200 33.333 3.62e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04471 K13181 - gmx:100776684 370.163