LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g04470	ATGCCAGACATTGTTGTGGCTACTCCAGGACGCATGATAGACCATTTACGCAATTCTATGTCGGTGGATTTGGATGATCTTGCTGTTTTAATCCTTGATGAGGCAGATCGTCTTTTGGAGCTTGGATTTAGTGCTGAAATTCACGAACTTGTTCGCATGTGTCCCAAAAAAAGGCAGACTATGCTGTTTTCAGCAACCATGACTGAAGAGGTGGATGAACTTATTAAACTTTCCCTGTCAAAACCCTTACGTCTTTCTGCTGATCCATCTGCAAAACGGCCAGCAACGTTGACCGAGGAGGTGGTTAGAATACGAAGAATGCGTGAAGTAAATCAGGAAGCAGTTCTTCTTGCAATGTGCTCCAAAACTTTTACTTCTAAAGTGATCATCTTCAGTGGAACGAAGCAAGCTGCACATAGGTTGAAGATTATATTTGGATTAGCTGGATTGAAAGCTGCTGAGCTTCATGGAAATCTTACTCAAGCCCAACGCCTTGAAGCTTTGGAACAGTTCAGGAAGCAGCAAGTGGATTTTTTGGTTGCAACTGATGTGGCTGCTCGTGGACTTGACATTATTGGTGTTCAAACTGTTATCAACTTTGCATGTCCACGCGATCTTACTAGCTATGTTCATCGAGTGGGTCGTACTGCAAGAGCTGGACGAGAAGGATATGCTGTCACATTTGTTACTGATAATGACCGGTCACTTTTAAAAGCCATTGCAAAGAGGGCTGGTTCAAAGCTGAAAAGCCGCATTGTTGCAGAGCAATCTATACTCAAGTGGTCTCAAATAATTGATCAAATGGAGGATCAAATTGCTGAAATATTTGAAGAAGAGAGGGAAGAAAGAGCCCTAAGGAAAGCTGAAATGGAGGCCACAAAGGCTGAAAACATGATTGCACATAAGGAGGAGATATTTTCCCGCCCCAAAAGAACCTGGTTTGTCACAGAGAAGGAGAAGAAGCTTGCTGCAACAGCAGCAAAGGTATCCATGCATAAAGGAAAGAGTTCTGGGAAGGAGGTAATTAGTGCCCAAGAAGCTGAAGACCTCAGAATGAAGGAAAAGAGGAAACGGGAGCGGGAGAAACATTTGCCAAGAAAGAAGCGCAGAAAATTGGAAGCAGCTAGAGAGATGTTGGAGGATGAGGACCAGGATGACAAGCCAGTAGAAGCTAAGGGAACAAATAAGAAAGAAAAGGGCGGGATGTCACTTGTTGATCTTGCTTACCGACGGGCAAAAGCAGTGAAGGCTGTCAAGAGGGCTCTAGATTCTGGCAAGATTGTAAGGAAGAGTCAAAAGAAATCTAACAATCCTTCTCGAAAGACTCCTTCAAGGACAGAAGAGATGCGGGAGCTATTCCAGACTGACATGAAGGAGAAAAAGACAAAGAAAAGAGGTATTGGAGCAGGAAAGAAGTCCAAGAGTTCATTCAAAAGCAAGTCAAGGTACAAGCGCAGGTAG	1461	0.4374	MPDIVVATPGRMIDHLRNSMSVDLDDLAVLILDEADRLLELGFSAEIHELVRMCPKKRQTMLFSATMTEEVDELIKLSLSKPLRLSADPSAKRPATLTEEVVRIRRMREVNQEAVLLAMCSKTFTSKVIIFSGTKQAAHRLKIIFGLAGLKAAELHGNLTQAQRLEALEQFRKQQVDFLVATDVAARGLDIIGVQTVINFACPRDLTSYVHRVGRTARAGREGYAVTFVTDNDRSLLKAIAKRAGSKLKSRIVAEQSILKWSQIIDQMEDQIAEIFEEEREERALRKAEMEATKAENMIAHKEEIFSRPKRTWFVTEKEKKLAATAAKVSMHKGKSSGKEVISAQEAEDLRMKEKRKREREKHLPRKKRRKLEAAREMLEDEDQDDKPVEAKGTNKKEKGGMSLVDLAYRRAKAVKAVKRALDSGKIVRKSQKKSNNPSRKTPSRTEEMRELFQTDMKEKKTKKRGIGAGKKSKSSFKSKSRYKRR.	487

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g04470	486	Gene3D	-	90	256	IPR027417	-
	Seca2g04470	486	Pfam	DEAD/DEAH box helicase	2	74	IPR011545	GO:0003676\|GO:0005524
	Seca2g04470	486	MobiDBLite	consensus disorder prediction	464	486	-	-
	Seca2g04470	486	Pfam	Helicase conserved C-terminal domain	117	220	IPR001650	-
	Seca2g04470	486	MobiDBLite	consensus disorder prediction	371	399	-	-
	Seca2g04470	486	PANTHER	ATP-DEPENDENT RNA HELICASE RHLE-RELATED	2	440	-	-
	Seca2g04470	486	SMART	helicmild6	135	220	IPR001650	-
	Seca2g04470	486	MobiDBLite	consensus disorder prediction	440	463	-	-
	Seca2g04470	486	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	2	240	IPR027417	-
	Seca2g04470	486	MobiDBLite	consensus disorder prediction	331	405	-	-
	Seca2g04470	486	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	1	85	IPR014001	-
	Seca2g04470	486	MobiDBLite	consensus disorder prediction	419	486	-	-
	Seca2g04470	486	Gene3D	-	1	89	IPR027417	-
	Seca2g04470	486	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	96	259	IPR001650	-
	Seca2g04470	486	MobiDBLite	consensus disorder prediction	342	356	-	-
	Seca2g04470	486	ProSitePatterns	DEAD-box subfamily ATP-dependent helicases signature.	31	39	IPR000629	-
	Seca2g04470	486	CDD	SF2_C_DEAD	97	229	-	-
	Seca2g04470	486	Coils	Coil	265	305	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g04470	Seca-Chr2	130073879	130079587	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g04470	4	237	Eukaryotic Initiation Factors Gene Family	AT3G13920	33.755	2.93e-31	123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g04470	K13181		-	gmx:100791233	731.095