Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04449 ATGGCTGCTTTCACTTGCTCCGCCGCCGATCTCCACCCTCTTCTTGGCACCGGTGCTAATGCCACTGCTGCTGCTGAATACATTTGTGGAGGCTTTGAAGCAATTTCAAACAAATTTGTTGATACTTCTTATGCTATTGATAACACCTACCTTCTTTTCTCTGCATACCTTGTTTTTGCTATGCAACTTGGTTTTGCCATGCTTTGTGCTGGTTCTGTCCGTGCCAAGAACACCATGAATATTATGCTTACCAATGTCCTTGATGCTGCCACTGGTGGCATCTTCTTTTACATCTTTGGTTTTGCCTTGGCTTTTGGTACCCCTTCTAATGGTTTCATTGGGAAGCACTTCTTTGGTCTTAACATGTTTCCTTCTCCATCTTTTGACTATGGATTCTTCCTCTATCAATGGGCTTTTGCAATTGCTGCAGCTGGGATTACCAGTGGTTCTATTGCAGAAAGGACACAGTTTGTGGCTTATTTGATTTACTCTTCATTTTTGACTGGTTTGGTGTACCCTGTTGTGGCTCATTGGTTCTGGTCTTCTGATGGTTGGGGTAGTCCTACACGTGTGGAGAATCTTTTGTTTGGATCTGGGGTCATTGATTTTGCTGGTTCTGGTGTTGTTCATTTGGTTGGAGCTATTGCTGGCTTCTGGGGTGCTTTAATTGAAGGCCCTCGTATTGGAAGATTTGATCATGAAGGAAAATCTGTGCCAATGAGAGGACATAGTGGTACTTTGGTTGTTTTGGGTACTTTCTTGTTGTGGTTTGGTTGGTATGGTTTCAATCCTGGCTCATTTTTTAACATTTTGAAGACTTATGGTGAAAGTGGTTCTTACTATGGACAATGGAGTGCTATTGGGAGGACTGCAGTGACCACAACTCTTGCTGGATGTTCAGCAGCACTCACTACTTTGTTTGGAAAACGTTTGCAAACTGGGCATTGGAATGTCACTGATGTTTGCAATGGTTTGCTTGGTGGGTTTGCTGCAATCACATCAGGGTGCTCTGTTGTTGACCCATGGGCTGCAATCATATGTGGGTTTGTGGCTGCTTGGGTGCTAATTGGATGCAACATTTTGGCAGAGAAATTGAAGTATGATGACCCTCTTGAGGCTGCACAACTTCATGGTGGTTGTGGCACTTGGGGGATCATTTTCACTGCATTGTTTGCTAAGAAACAGTATGTGAATGAGGTATTCCCAGGGTACCCTGATAGGCCTTATGGACTCTTCGTGGGAGGGGGTGGAAGGCTCTTGGCAGCACATTTTATGCAGATTTTGGCTATCACAGCTTGGGTGAGTGTCACCATGGGAATTATGTTCTTTGTGCTGCACAAACTCAAACTTCTGAGGACATCACCTGAAGAGGAAATGGCTGGCTTGGACTTAACTAGCCATGGTGGATTGGCATGA 1416 0.4449 MAAFTCSAADLHPLLGTGANATAAAEYICGGFEAISNKFVDTSYAIDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFFYIFGFALAFGTPSNGFIGKHFFGLNMFPSPSFDYGFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPVVAHWFWSSDGWGSPTRVENLLFGSGVIDFAGSGVVHLVGAIAGFWGALIEGPRIGRFDHEGKSVPMRGHSGTLVVLGTFLLWFGWYGFNPGSFFNILKTYGESGSYYGQWSAIGRTAVTTTLAGCSAALTTLFGKRLQTGHWNVTDVCNGLLGGFAAITSGCSVVDPWAAIICGFVAAWVLIGCNILAEKLKYDDPLEAAQLHGGCGTWGIIFTALFAKKQYVNEVFPGYPDRPYGLFVGGGGRLLAAHFMQILAITAWVSVTMGIMFFVLHKLKLLRTSPEEEMAGLDLTSHGGLA. 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04449 471 Pfam Ammonium Transporter Family 50 469 IPR024041 GO:0008519|GO:0016020|GO:0072488
Seca2g04449 471 FunFam Ammonium transporter 28 471 - -
Seca2g04449 471 SUPERFAMILY Ammonium transporter 45 452 - -
Seca2g04449 471 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Seca2g04449 471 PANTHER AMMONIUM TRANSPORTER 28 467 - -
Seca2g04449 471 Gene3D Ammonium transporter AmtB like domains 28 471 IPR029020 -
Seca2g04449 471 NCBIfam ammonium transporter 47 469 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04449 Seca-Chr2 129907321 129908736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04449 5 471 Inorganic Solute Cotransporters AT4G13510 76.282 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04449 K03320 - cave:132166278 846.269