Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04448 ATGATTCATCAAGGGCTGTTAAACAGATTTGGAGTGAAAAGTCACGCAGTGAAAAATGGCAAAGAAGCTGTAGACATTCATAGCCAAGGTCAAAGTTTTGACCTAATACTCATGGATAGGGAAATGCCAATCATGAATGGAATCGATGCAACAAAACAACTTCGTTCTATGGGCATTCGTAGCATGATTGTTGGTGCATCATCATGCTTTGTGGAAGCGGAAATACAAGAATTTATGGAAGCAGGGCTAGATGATTTTAAAGTGAAACCCTTGACCGTTGATGTGCTTAATTCAATTCTTGAAAGGATCAGGTGA 315 0.3937 MIHQGLLNRFGVKSHAVKNGKEAVDIHSQGQSFDLILMDREMPIMNGIDATKQLRSMGIRSMIVGASSCFVEAEIQEFMEAGLDDFKVKPLTVDVLNSILERIR. 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04448 104 CDD REC_hyHK_CKI1_RcsC-like 1 100 - -
Seca2g04448 104 PANTHER TWO-COMPONENT RESPONSE REGULATOR 2 103 - -
Seca2g04448 104 SMART REC_2 2 100 IPR001789 GO:0000160
Seca2g04448 104 SUPERFAMILY CheY-like 2 103 IPR011006 -
Seca2g04448 104 Pfam Response regulator receiver domain 5 99 IPR001789 GO:0000160
Seca2g04448 104 Gene3D - 1 104 - -
Seca2g04448 104 ProSiteProfiles Response regulatory domain profile. 1 104 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04448 Seca-Chr2 129905011 129905449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04448 2 92 Response Regulator Gene Family AT3G04280 49.462 2.32e-22 83.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca2g04448 Response_reg 3.5e-14 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04448 - - cam:101506170 149.058