Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04440 ATGCAGCAGGGTGGTGGTGGGTCGATATCAACGGTGTCTAAAGATGACAACTTGGTCCTCTCCTCTGAGTCTGAGGATTCTTGTTGCCCAGATGAGTCAGAACTCCAATTGGGTCTTTCGTTGACCCTCTCTCCCTATGCCAATTTTCCTCCTCCTTCTTCTTCCTCTTCGTTAAGTAGCTGCAGAAGGAAGACTAATGTCACATCTTCTGGGACCAAAAGACCAGCTCATTCTGATTCTCATTCTGCTGTCGCCTCTGTTAACGGTCCCAGTCAAGTAGTTGGATGGCCCCCTCTTGGAGCATATAGAATGAACAGCTATAATAGCCATGCAAAATCACCAGCCACTGAAGTATTCAATTCCATGGTTGAAAAAAGTAAGAGCAATAGAGCTGTGGTAAGGAAGAGTGCTGACAATGGCAGTGATAATAACAGCATTATTTCCAAAGAAAATAGAAACCCTTTGGGTTCCCTGTTTGTAAAAGTGAAAATGGATGGGATGCCAATTGGAAGGAAGGTTGATTTAAGTGCTCATAGTTCCTATGAAACGTTAGCTCAATCCTTGGAGGATATGTTTAATGAACCAACTACAGCTCTCACCTGTAAAGTTGGAGCAGATGGGCAGTTAAAATTGTTCGATGGATCTTCCAACTTTGTGCTCACATATGAAGACAAGGAAGGAGACTGGATGCTTGTAGGAGATGTTCCCTGGTGGATGTTCCTTAGCTCTGTGAGGAGGCTAAGAATCATGAGGACATCTGAGGCTAATGGACTTGCATCAAGATTGGAAGAAAAGAACAGTAGATTGAAGAGAAATCCCGTGTAG 825 0.4376 MQQGGGGSISTVSKDDNLVLSSESEDSCCPDESELQLGLSLTLSPYANFPPPSSSSSLSSCRRKTNVTSSGTKRPAHSDSHSAVASVNGPSQVVGWPPLGAYRMNSYNSHAKSPATEVFNSMVEKSKSNRAVVRKSADNGSDNNSIISKENRNPLGSLFVKVKMDGMPIGRKVDLSAHSSYETLAQSLEDMFNEPTTALTCKVGADGQLKLFDGSSNFVLTYEDKEGDWMLVGDVPWWMFLSSVRRLRIMRTSEANGLASRLEEKNSRLKRNPV. 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04440 274 Coils Coil 252 272 - -
Seca2g04440 274 MobiDBLite consensus disorder prediction 1 26 - -
Seca2g04440 274 MobiDBLite consensus disorder prediction 50 89 - -
Seca2g04440 274 FunFam Auxin-responsive protein 152 262 - -
Seca2g04440 274 MobiDBLite consensus disorder prediction 1 33 - -
Seca2g04440 274 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 33 257 IPR003311 GO:0005634|GO:0006355
Seca2g04440 274 ProSiteProfiles PB1 domain profile. 157 254 IPR000270 GO:0005515
Seca2g04440 274 Gene3D - 153 264 - -
Seca2g04440 274 SUPERFAMILY CAD & PB1 domains 154 250 - -
Seca2g04440 274 Pfam AUX/IAA family 70 261 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04440 Seca-Chr2 129816904 129820969 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04440 161 263 B3 DNA Binding Superfamily AT3G61830 33.010 1.13e-11 62.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca2g04440 AUX_IAA 1.3e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04440 K14484 - gmx:100779400 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04440 2 129816904 129820969 Seca2g04440 2 129816904 129820969 ECH
Seca2g04440 2 129816904 129820969 Seca2g04440 2 129816904 129820969 PCT