Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04432 ATGCCGGAGCCAGACCAGAAAAATAAAAGCAAGCAGCCTATGGTGGCTGAAATGTCTTTTGGCTTTTCAAACATCCAAGAAGGGGAGGCAGATGATGAAGAATCTCATATGCATGATGAGCCATTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGCCAAAAGGTTCAATCTTCACGCCTTCTGACTAGTTGTGGCCCTAGCTCTGCTTCCTTTCCATTGAAAACACCTAAATTAGAAGATGGCACAATACCTCAAAGTAATTCCAGATTGCAGCCTCAAAGCACAGCAGTGTTACCTGATGGAAATGCAAGGATTGAAGCGCATCAAGTTCCACCACGAGATGCCATTGTTGACAAGGGAAAACAACCTGTATCACCTCAAGATACTCCTAGAGGGAGAAGATCTATATCTGACAGAACTACTCCTACAGTGCCATTTAAAGAACCAATAGTCGAACCAGGAGCCTCTCTGTCATCAGAAACCAAAATGCCTCATTATTACACTTTTATCAAGCCCAAGGATGAGCCTGTTGATGATATACTAGATTATGAAGTTCCCCTTGCAGTGATTCATCCTGAAGAACCATCAAGTGGAGGAGACTCTTCATTGAAAAATGATTCAGTTGGTCTGCAAGATGGCCATGACACTGTGGCATCACAAGGCAGAGGTGAAGACGGTGAAGGTGAAGATATTCTTCCTTCCTCAAATGAAGAAGCGACTTCTAATGTAGAGCTAACCACATCTTCTATGGGAGAGGAAGGACCTGTGGAGATAACAATAACTGTTGATAGTTCAATGGAGTCTGAGGCAAATGGCACACTGATTGTCAGAGGAAAAAAAGATCTGATCATGCGATCTTGCGTTTCAAATAGATCAATTAGTGTTATGTCTTCTCCTACCCTGGTTGCACCTCAAGTTCCCGATTCTTCACCCGGCTGGAGTGGTCTGGATGATACTGCACAAGGTTCCGAGAAGGCTGGGATGAATGATATTTTGGAAAGTGATGGCAGGAATGAGCTAGAGAAACCTTCAGTGAATGCTCCAAAGCATCAGCCTGCAACTGGTGATATAAGGGCAATTTGTGATGTTAATGACATAACAAAGGGAGAAGAAAGCGTGAAAATTTCATGGGTGAATAACAGTACTAATGATTCCCCAACATCCTTTCACTACATACCGCGAAACCTTGTGTTCAAAGATGCATATGTTAATTTTTCACTATCTCGAATCAGGAATGAGGATCGTTGTTCTACTTGTATGGGCAATTGTGTCTTATCATCTAAACCATGTTCGTGTGCAAATAAAACTGGGGGTGAATTTGCTTACACTGCACAAGGCCTACTAAAGGAAGAGTTCTTGGATGAGTGTATTGCCATCATCCGGGACCCTCAAAATTATTTTTATTGCAAAGACTGCCCGCTTGAAAGATCAAAGAGTGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGCTGGAGTAAATGTGGCTGTGGTAAACAATGTGGCAATCGGGTTGTGCAGCGTGGAATTACTTGCAACTTGCAGACGGAAAAAGGGTGGTGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTATTTGTGAGTATGTTGGAGAAATTTTGACTGTCAAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAATTTTCATACCCAATTTTATTGGATGCCGATTGGGGTTCTAGAGCGGTGAAGGATAATGAAGCTCTTTTCTTATATGCAGCAACATTTGGAAATGTTGGTAGGTTTATTAACCACAGATGTTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCGACTCATCACTACTATCATGTGAGAAATTAG 1893 0.4194 MPEPDQKNKSKQPMVAEMSFGFSNIQEGEADDEESHMHDEPLRPLKRLRLRGQKVQSSRLLTSCGPSSASFPLKTPKLEDGTIPQSNSRLQPQSTAVLPDGNARIEAHQVPPRDAIVDKGKQPVSPQDTPRGRRSISDRTTPTVPFKEPIVEPGASLSSETKMPHYYTFIKPKDEPVDDILDYEVPLAVIHPEEPSSGGDSSLKNDSVGLQDGHDTVASQGRGEDGEGEDILPSSNEEATSNVELTTSSMGEEGPVEITITVDSSMESEANGTLIVRGKKDLIMRSCVSNRSISVMSSPTLVAPQVPDSSPGWSGLDDTAQGSEKAGMNDILESDGRNELEKPSVNAPKHQPATGDIRAICDVNDITKGEESVKISWVNNSTNDSPTSFHYIPRNLVFKDAYVNFSLSRIRNEDRCSTCMGNCVLSSKPCSCANKTGGEFAYTAQGLLKEEFLDECIAIIRDPQNYFYCKDCPLERSKSDDCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVVQRGITCNLQTEKGWCLRTLEDLPKGAFICEYVGEILTVKELHERNLKYPKNGKFSYPILLDADWGSRAVKDNEALFLYAATFGNVGRFINHRCLDANLIEIPVEVEGPTHHYYHVRN. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04432 630 MobiDBLite consensus disorder prediction 55 70 - -
Seca2g04432 630 Pfam Pre-SET motif 366 511 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g04432 630 SUPERFAMILY SET domain 360 628 IPR046341 -
Seca2g04432 630 MobiDBLite consensus disorder prediction 198 214 - -
Seca2g04432 630 Pfam SET domain 526 614 IPR001214 GO:0005515
Seca2g04432 630 SMART set_7 515 628 IPR001214 GO:0005515
Seca2g04432 630 MobiDBLite consensus disorder prediction 29 47 - -
Seca2g04432 630 MobiDBLite consensus disorder prediction 301 323 - -
Seca2g04432 630 MobiDBLite consensus disorder prediction 80 95 - -
Seca2g04432 630 ProSiteProfiles Pre-SET domain profile. 415 516 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g04432 630 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 25 628 - -
Seca2g04432 630 Gene3D SET domain 347 629 IPR046341 -
Seca2g04432 630 MobiDBLite consensus disorder prediction 128 142 - -
Seca2g04432 630 MobiDBLite consensus disorder prediction 1 95 - -
Seca2g04432 630 ProSiteProfiles SET domain profile. 510 630 IPR001214 GO:0005515
Seca2g04432 630 MobiDBLite consensus disorder prediction 234 254 - -
Seca2g04432 630 MobiDBLite consensus disorder prediction 301 317 - -
Seca2g04432 630 SMART preset_2 363 503 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g04432 630 MobiDBLite consensus disorder prediction 109 158 - -
Seca2g04432 630 MobiDBLite consensus disorder prediction 191 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04432 Seca-Chr2 129705377 129710947 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04432 495 628 C2H2 Transcription Factor Family AT2G23740 37.857 2.35e-19 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca2g04432 Pre-SET 1.2e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04432 - - gmx:100809678 830.476