LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca2g04431	ATGGCACCAAATCCAAAAGTAGTAGCGGCTTATCGTGCAATGGAAAATCTTGGAATTCATGAATCAAAAGTGAAACCAGTATTAAAGAAACTACTTAAATTGTATGATAAAAGCTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCAGATGCTATATTTGAGGAGGATGAAAACAAGGTGTCGGAGCCAGACCAGAAAAATAAAAGCAAGCAGGAAGGGGAGGTAGATGATGAAGAATCTTATATGCATGATGAGCCATTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGCCAAGAGGTTCAATCTTCATGCCTTCTGACTAGTTGTGGCCCCAGCTTTGCAGCTTTTCCCTTGAAAACACCTAAATTAGAAGATGGCACAATACCTCAAAGTAATTCCAGATTGCAGCCTCAAAGCACAGCAGTGTTACCTGATGGAAATGCAAGGATTGAAGCGCATCAAGTTCCACCACGAGATGCCATTGTTGACAAGGGAAAGCAACCCGTATCACCTCAAGATACTCCCAGAGGGAGAATATTTATATCTGACAGAACTACTCCTGCGGTGCCATTTGAAGAACCAACAGTTGAACCAGGAGCCTCTCTGTCATCAAAAAACAAAATGCCTCATTCTTACACTTTTATCAAGCCCAAGGATGAGCCAGTTGATGATATACTAGATTATGAAGTTCCCCTTACAGTGATTCGTCCTGAAGAACCATCAAGTGGAAGAGACTCTTCATTGAAAAATGATTCAGCTGGTCTGCGAGATGGCCAAGACACTGTGGCATCACAAGGTAGAGGTGAAGACGGTGAAGGTGAATATATTCTTCCTTCCTCAAATGAAGAAGCGGCTTCTAATGTAGAGCTAACCCCATCTTCTATGGGAGAGGAAGGACATGTGAAGATAACACTAACTGTTGATAGTTCAATGGAGACTGAGGCAAATGGCACACTGATTGTCAGAGGAAAAAAAGATCCGATCATGCGATCTTGCATTTCAAATGGATCAATCAGTGTTATGTCTTCTCCTACCCTGGTTGCACCTCAAGTTCCCGATTCTTCACCCGGCTGGAGTGGTCTGGATGATACTGCACAAGGTTCCGAGAAGGCTGCGATGAATGATATTTTAGAAAGTAATGGTAGGAATGAGCTAGAGAAACCTTTAGTGAATGCTCCAAAGCATCAGCCTGCAACTGGTGATATAAGGGCAATTTGTGATGTTAATGACATAACAAAGGGAGAAGAAAGCGTGAAAATTTCATGGGTGAATAACAGTACTAATGATTCCCCAACATCATTTCACTACATACCGCGAAACCTTGTGTTCAAAGATGCATATGTTAATTTTTCACTATCTCGAATCAGGAATGAGGATTGTTGTTCTACTTGTATGGGCAATTGTGTCTTGTCATCTAAACCATGTTCATGTGCAAATAAAACTGGGGGTGAATTTGCTTACACTGCACAAGGCCTACTAAAGGAAGAGTTCTTGGATGAGTGTATTGCCATCATTCGGGACCCTCAAAATTATTTTTATTGCAAAGACTGCCCGCTTGAAAGATCAAAGAGTGATTATTATTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGCTGGAGTAAATGTGGTTGTGGTAAACAATGTGGCAATCGGGTTGTGCAGCATGGAATTACTTGCAACTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTATTTGTGAGTTTGTTGGAGAAATTTTGACTGTCAAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAATGGGAAATTTACATACCCAATTTTATTGGATGTCGATTGGGGTTCTAGTGCGGTGAAGAATAATGAAGCTCTTTGCTTATACGCAACAACATTTGGAAATGCTGCTAAGTTTATCAACCACAGATGTTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCGACTCATCACTACTATCATTTTGCCTTCTTCACATCCAGGAAAATAGCAACACAAGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGATCATGACCAACTAGTTGAGTTGTTCCGGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGTGA	2178	0.4109	MAPNPKVVAAYRAMENLGIHESKVKPVLKKLLKLYDKSWELIEEENYRALADAIFEEDENKVSEPDQKNKSKQEGEVDDEESYMHDEPLRPLKRLRLRGQEVQSSCLLTSCGPSFAAFPLKTPKLEDGTIPQSNSRLQPQSTAVLPDGNARIEAHQVPPRDAIVDKGKQPVSPQDTPRGRIFISDRTTPAVPFEEPTVEPGASLSSKNKMPHSYTFIKPKDEPVDDILDYEVPLTVIRPEEPSSGRDSSLKNDSAGLRDGQDTVASQGRGEDGEGEYILPSSNEEAASNVELTPSSMGEEGHVKITLTVDSSMETEANGTLIVRGKKDPIMRSCISNGSISVMSSPTLVAPQVPDSSPGWSGLDDTAQGSEKAAMNDILESNGRNELEKPLVNAPKHQPATGDIRAICDVNDITKGEESVKISWVNNSTNDSPTSFHYIPRNLVFKDAYVNFSLSRIRNEDCCSTCMGNCVLSSKPCSCANKTGGEFAYTAQGLLKEEFLDECIAIIRDPQNYFYCKDCPLERSKSDYYLEPCKGHLKRKFIKECWSKCGCGKQCGNRVVQHGITCNLQVFLTSDGKGWGLRTLEDLPKGAFICEFVGEILTVKELHERNLKYPKNGKFTYPILLDVDWGSSAVKNNEALCLYATTFGNAAKFINHRCLDANLIEIPVEVEGPTHHYYHFAFFTSRKIATQEELTWDYGINFDDHDQLVELFRCRCGSKFCRNMK.	726

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca2g04431	725	ProSiteProfiles	Pre-SET domain profile.	462	563	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Seca2g04431	725	Pfam	Ubiquitin-binding WIYLD domain	6	60	IPR018848	-
	Seca2g04431	725	SMART	set_7	566	705	IPR001214	GO:0005515
	Seca2g04431	725	Gene3D	SET domain	396	709	IPR046341	-
	Seca2g04431	725	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	1	725	IPR025776	-
	Seca2g04431	725	Pfam	Pre-SET motif	413	558	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Seca2g04431	725	CDD	SET_SETDB-like	435	699	-	-
	Seca2g04431	725	SMART	preset_2	410	550	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Seca2g04431	725	MobiDBLite	consensus disorder prediction	236	296	-	-
	Seca2g04431	725	ProSiteProfiles	SET domain profile.	566	699	IPR001214	GO:0005515
	Seca2g04431	725	MobiDBLite	consensus disorder prediction	57	89	-	-
	Seca2g04431	725	Pfam	SET domain	578	699	IPR001214	GO:0005515
	Seca2g04431	725	MobiDBLite	consensus disorder prediction	191	210	-	-
	Seca2g04431	725	SUPERFAMILY	SET domain	420	722	IPR046341	-
	Seca2g04431	725	Gene3D	-	1	60	IPR043017	-
	Seca2g04431	725	PANTHER	INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED	1	725	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca2g04431	Seca-Chr2	129636975	129643339	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca2g04431	362	722	Su(var)3-9 homologs	AT1G73100	27.250	1.03e-28	120

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Seca2g04431		Pre-SET	4.8e-19	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca2g04431	-		-	gmx:100809678	1028.08