Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04427 ATGAGTGTATTGCCATCATCCGGGACGCTCAATTATTTTTATTGCAAAGACTGCCTGCTTGAAAGATCAAAGGGTGATGATTGTTTAGAACCATGTAAAGGATACTTGAAGAGGAAGTTTATTAAAGAGTGTTGGAGTAAATGTGGCTGTGGTAAACAATGTGGCAATCAGGTTGTGCAGCGTGGAATTACTTGCAACTTGCAGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCTTCATACCTTAGAGGATCTTCCAAAAGGTGCATTTATTTGTGAGTTTGTTGGAGAAATTTTGACTGTCAAAGAGTTGCATGAGAGGAGCTTGAAATATCCCAAAAATGGGAAATTTACATACCCAATTTTATTAGATGTCGATTGGGGTTCTAGAGCGGTGAAGGATAATGAAGCTCTTTGCTTATATGCAACGACATTTGGAAATGCTGCTAGGTTTATCAACCACAGATGTTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCGCCTCATCACTACTATCATGTTGCCTTCTTCACATCCAGGAAAATAACAGCACAAGAAGAGCTCACTTGGGATTATGGCATCCACTTTGATGATCATGACCAACTAGTTGAGTTGTTCCAGTGCAGATGTGGCAGTAAATTCTGCAGGAATATGAAGTGA 678 0.4056 MSVLPSSGTLNYFYCKDCLLERSKGDDCLEPCKGYLKRKFIKECWSKCGCGKQCGNQVVQRGITCNLQQVFLTSDGKGWGLHTLEDLPKGAFICEFVGEILTVKELHERSLKYPKNGKFTYPILLDVDWGSRAVKDNEALCLYATTFGNAARFINHRCLDANLIEIPVEVEGPPHHYYHVAFFTSRKITAQEELTWDYGIHFDDHDQLVELFQCRCGSKFCRNMK. 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04427 225 ProSiteProfiles SET domain profile. 65 199 IPR001214 GO:0005515
Seca2g04427 225 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 11 225 - -
Seca2g04427 225 Pfam SET domain 78 199 IPR001214 GO:0005515
Seca2g04427 225 SUPERFAMILY SET domain 16 222 IPR046341 -
Seca2g04427 225 Gene3D SET domain 5 224 IPR046341 -
Seca2g04427 225 SMART set_7 66 205 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04427 Seca-Chr2 129607060 129609696 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04427 41 224 C2H2 Transcription Factor Family AT2G23740 37.234 4.85e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca2g04427 SET 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04427 - - gmx:100809678 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04427 2 129607060 129609696 Seca2g04427 2 129607060 129609696 ECH
Seca8g06242 8 156506647 156519981 Seca2g04427 2 129607060 129609696 PCT
Seca2g04427 2 129607060 129609696 Seca8g05582 8 147294444 147301813 PCT