Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04426 ATGGCACCAAATCCAAAAGTAGTAGCGGCCTATCGTGCAATGGAAAATCTTGGAATTCATGAATCAAAAGTGAAACCAGTATTAAAGAAACTACTTAAATTGTATGATAAAAACTGGGAACTTATTGAAGAAGAGAATTATAGGGCTCTTGCAGATGCTATATTTGAGGAGGATGAAAATAAGGTGCCGGAGCCAGACCAGAAAAATAAAAACAAGCAGGAAGGGGAGGCAGATGATGAAGAATCTCATATGCATGATGAGCCATTGCGACCTTTGAAGAGGTTGCGTTTAAGAGGCCAAGAGGTTCAATCTTCACGCCTTCTGACTTGTTGTGTCCCCAGCTCTGCTGCCTATCCATTGAAAACACCTAAATTAGAGGATGGCACAATACCTCAAAGTAATTCCAGATTGCAGCCTCAAAGCACAACAGTGTTACCTGATGGAAATACAAGGATTGAAGCACATCAAGTTTCACCACAAGATGCCATTGTTGACAAGGGAAAGCAACTTGTATCACCTCAAGATACTCCCAGAGGGAGAAGATCTATATCTGAAAGAACTACTCCTGCGGTGCCATTTAAAGAACCAACAGTCGAACCAGGAGCCTTTCTGTCATCAAAAAACAAAATGCCTCATTCTTACACTTTTATCAAGCCCAAGGATGAGCCTGTTGATGATATACTAGATTATGAAGTTCCCTTTGTAGTGATTCATCCTGAAGAACCATCAAGTGGAAGAGACTCTTCATTGATAAATGATTCAGCTGGTCTGCAAGATGGCCATGACACTGTGGCATCACAAGGCAGAGGTGAAGACGGTGAAGGTGAAGATATTCTCCCTTCCTCAAATGAAGAAGCGACTTCTAATGTAGAGCTAACCCCATCTTCTACGGGAGAGGAAGGACCTGTGGAGGTAACACTAACTGTTGATAGTTCAATGGAGTCTGAGGCAAATGGCACACTGATTGTCAGAGGAAAAAAAGATCCGATCATGCGATCTTGCGTTTCAAATGGATCAATCAGTGTTATATCTTCTCCTACCCTGGTTGCACCTCAAGTTCCCGATTCTTCACCCGACTGGAGTGGTCTGGATGATACTACACAAGGTTCCGAGAATGCTGGGATGAATGATATCTTGGTAAGTGATGGCAGGAATGAGCTAGAGAAACCTTTAGTGAATGCTCCAAAGCATCAGCCTGCAACTGGTGATATAAGGGCAATTCGTGATGTTAGTGACATAACAAAGGGAGAAGAAAGCGTGAAAATTTCATGGGTGAATAACAGTACTAATGATTCCCCAACATCCTTTCACTACATACCGCGAAACCATGTGTTCAAAGATGCATATGTTAATTTTTCACTATCTCAAATCAGGAATGAGGATTGTTGTTCTACTTGTATGGGCAATTGTGTCTTGTCATCTAAACCATGTTCATGTGCAAATAAAACTGGGGGTGAATTTGCATACACTGCACAAGGCCTACTAAAGGAAAAGTTCTTGGATGAGTGTATTGCCATCATCCGGGACGCTCAAAATTATTTTTATTGCAAAGACTGCCCGCTTGAAAGATCAAAGAGTGATGATTGTTTAGAACCATGTAAAGGACACTTGAAGAGGAAGTTTATTAAAGAGTGTTGGAGTAAATGTGGCTGTGGTAAACAATGTGGCAATCGGGTTGTGCAGCGTGGAATTACTTGCAACTTGCAGGTGTTTTTAACTTCAGACGGAAAAGGGTGGGGTCCTCGTACCTTAGAGGATCTTCCAAAAGGTGCATTTATTTGTGAGTTTGTTGGAGAAATTTTGACTGTCAAAGAGTTGCATGAGAGGAACTTGAAATATCCCAAAAGTGGGAAATTTACATACCCAATTTTATTGGATGCCGATTGGGGTTCTAGATCGGTGAAGGATAATGAAGCTCTTTGCTTATATGCAACAACATTTGGAAATGCTGCTAGGTTTATTAACCACAGATGTTTAGATGCAAACTTGATTGAGATCCCAGTTGAAGTTGAGGGCCCGACTCATCACTACTATCATTTTGCCTTCTTCACATCCAGGAAAATAGCAGCACAGGAAGAGCTCACTTGGGATTATGGCATCAACTTTGATGATCATGACCAACTAGTTGAGTTGTTCCAGTGCAGATGTGGCGGTAAATTCTGCAGGAATATGAAGCGATCAAATAGATCCATTAAATCGTCAACTTCATGA 2211 0.4138 MAPNPKVVAAYRAMENLGIHESKVKPVLKKLLKLYDKNWELIEEENYRALADAIFEEDENKVPEPDQKNKNKQEGEADDEESHMHDEPLRPLKRLRLRGQEVQSSRLLTCCVPSSAAYPLKTPKLEDGTIPQSNSRLQPQSTTVLPDGNTRIEAHQVSPQDAIVDKGKQLVSPQDTPRGRRSISERTTPAVPFKEPTVEPGAFLSSKNKMPHSYTFIKPKDEPVDDILDYEVPFVVIHPEEPSSGRDSSLINDSAGLQDGHDTVASQGRGEDGEGEDILPSSNEEATSNVELTPSSTGEEGPVEVTLTVDSSMESEANGTLIVRGKKDPIMRSCVSNGSISVISSPTLVAPQVPDSSPDWSGLDDTTQGSENAGMNDILVSDGRNELEKPLVNAPKHQPATGDIRAIRDVSDITKGEESVKISWVNNSTNDSPTSFHYIPRNHVFKDAYVNFSLSQIRNEDCCSTCMGNCVLSSKPCSCANKTGGEFAYTAQGLLKEKFLDECIAIIRDAQNYFYCKDCPLERSKSDDCLEPCKGHLKRKFIKECWSKCGCGKQCGNRVVQRGITCNLQVFLTSDGKGWGPRTLEDLPKGAFICEFVGEILTVKELHERNLKYPKSGKFTYPILLDADWGSRSVKDNEALCLYATTFGNAARFINHRCLDANLIEIPVEVEGPTHHYYHFAFFTSRKIAAQEELTWDYGINFDDHDQLVELFQCRCGGKFCRNMKRSNRSIKSSTS. 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04426 736 MobiDBLite consensus disorder prediction 348 375 - -
Seca2g04426 736 Gene3D SET domain 404 710 IPR046341 -
Seca2g04426 736 ProSiteProfiles SET domain profile. 566 699 IPR001214 GO:0005515
Seca2g04426 736 MobiDBLite consensus disorder prediction 245 261 - -
Seca2g04426 736 SUPERFAMILY SET domain 406 705 IPR046341 -
Seca2g04426 736 SMART preset_2 410 550 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g04426 736 Pfam Pre-SET motif 413 558 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g04426 736 Pfam Ubiquitin-binding WIYLD domain 6 60 IPR018848 -
Seca2g04426 736 Gene3D - 1 60 IPR043017 -
Seca2g04426 736 PANTHER INACTIVE HISTONE-LYSINE N-METHYLTRANSFERASE SUVR1-RELATED 1 733 - -
Seca2g04426 736 SMART set_7 566 705 IPR001214 GO:0005515
Seca2g04426 736 MobiDBLite consensus disorder prediction 348 377 - -
Seca2g04426 736 MobiDBLite consensus disorder prediction 281 302 - -
Seca2g04426 736 CDD SET_SETDB-like 435 699 - -
Seca2g04426 736 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 736 IPR025776 -
Seca2g04426 736 MobiDBLite consensus disorder prediction 170 204 - -
Seca2g04426 736 ProSiteProfiles Pre-SET domain profile. 462 563 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Seca2g04426 736 MobiDBLite consensus disorder prediction 57 92 - -
Seca2g04426 736 MobiDBLite consensus disorder prediction 127 145 - -
Seca2g04426 736 Pfam SET domain 578 699 IPR001214 GO:0005515
Seca2g04426 736 MobiDBLite consensus disorder prediction 239 302 - -
Seca2g04426 736 MobiDBLite consensus disorder prediction 122 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04426 Seca-Chr2 129587299 129594364 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04426 383 722 Su(var)3-9 homologs AT1G73100 28.184 8.91e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Seca2g04426 Pre-SET 5.9e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04426 - - gmx:100809678 1044.26