Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04422 ATGGAAGCACGCCCTGCTTTCTCTATTGAAAGATCAAGTGCAAAGCAACTCAATAACATAGGGATGTCCGGAGCACTTCCTTCATCGTTACCTGTCCTTCCAACACCTCTAGAAGAGACATACCCCAAATTATCTGATTCACAGCCAGCTTTTGTGGAAAAGGAGCTTAAAACAAGACCTTTGACACATTCAAGTCATTTAATTTCCAGCGGAGCAGTTGGACATATGTTTTCATCTTCCCCCGGATATTCAACTGATCTTCACCACTCATCCCTTTCACCTCATGAAAAACACTCTAGGAATGCTCATTTTATTTCACAGTCAATGAGTAACATGGCTTCATTGCCATTATCTTATTCTTCAAATAATGGACCAGTATCTTCTACAACATCAACTCATTATTCCAAAGGAAACAGTGCTTCCTGGAATGCAGATTCCCTGCCTAGCTTTCTTGATTTCTCTGTGAATACCCCTATTGATAATAGTCAAGTAGAGAGCAGTGCCTGCAATATTATGGCAACTGAGGAGTACTCTAAGCGAAATGATTGGCAGGAGTGGGCCGATCAGCTAATAAGTGATGATGATACTTTGACTTCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCAAAGGTGGTGGATCAGGTTTCAAATTCATCTTCACAATTTCCAGCAGGACACCAATCCCAAGGTCACCAACAACTTCCTACTTCATCTGGGGAAAATCGTGTTGGTGCTGCCCCATCTTCCTCAGCAAATTCTGCACCTGCCAAGGCACGGATGCGTTGGACACCTGAGCTTCATGAGGCATTTGTGGAAGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAGGGTGTGCTGAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGCCACTTACAGAAATACAGGACAGCTAGATATAGACCAGAGTCATCTGAAGGAGCTTCAGAGAAAAAACTAAGTCCCATTGAAGAGATGTCATCCCTAGATTTGAAAACTGGTATTGAGATCACTGAAGCTCTGCGACTGCAGATGGAGGTTCAGAAGCGGTTGCATGAACAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATAGAAGAACAAGGAAGGTACCTCCAGATGATGTTTGAGAAGCAATGCAAATCTGGGGTTGAAGCATTTAAGGCATCACCATCTGCCATTGAGGGTCAATCTGGAGTGTCTTCTGATATCATGAAAGATTCTCCTGCCAAAACCGAAGTGGAAGCATCCAAAGTGGAAAATGGCAGTTCAGGACCTGATCAAGCTAATGGCAGTACCACAGTAGCAGAAAGCTCGCAGGGAGAGGGTGGGAAGCAGGATGCTCCTGAAAGTCAAGCTTCTGAGAATCCTGAGCAACATACTAATCATGAAGATTGTGCTCACGCCCCAAAGCGTCCAAGGACAGAAGAGTAA 1470 0.4347 MEARPAFSIERSSAKQLNNIGMSGALPSSLPVLPTPLEETYPKLSDSQPAFVEKELKTRPLTHSSHLISSGAVGHMFSSSPGYSTDLHHSSLSPHEKHSRNAHFISQSMSNMASLPLSYSSNNGPVSSTTSTHYSKGNSASWNADSLPSFLDFSVNTPIDNSQVESSACNIMATEEYSKRNDWQEWADQLISDDDTLTSNWNDLLADNIQDLEPKVVDQVSNSSSQFPAGHQSQGHQQLPTSSGENRVGAAPSSSANSAPAKARMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGASEKKLSPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVEAFKASPSAIEGQSGVSSDIMKDSPAKTEVEASKVENGSSGPDQANGSTTVAESSQGEGGKQDAPESQASENPEQHTNHEDCAHAPKRPRTEE. 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04422 489 FunFam Myb family transcription factor 261 319 - -
Seca2g04422 489 Pfam Myb-like DNA-binding domain 264 315 IPR001005 -
Seca2g04422 489 MobiDBLite consensus disorder prediction 469 489 - -
Seca2g04422 489 SUPERFAMILY Homeodomain-like 260 316 IPR009057 -
Seca2g04422 489 MobiDBLite consensus disorder prediction 429 468 - -
Seca2g04422 489 MobiDBLite consensus disorder prediction 219 261 - -
Seca2g04422 489 MobiDBLite consensus disorder prediction 404 489 - -
Seca2g04422 489 Coils Coil 350 370 - -
Seca2g04422 489 Pfam MYB-CC type transfactor, LHEQLE motif 347 394 IPR025756 -
Seca2g04422 489 Gene3D - 261 320 - -
Seca2g04422 489 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 234 467 IPR044848 GO:0003700
Seca2g04422 489 NCBIfam myb-like DNA-binding domain, SHAQKYF class 262 316 IPR006447 GO:0003677
Seca2g04422 489 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 259 319 IPR017930 -
Seca2g04422 489 MobiDBLite consensus disorder prediction 219 265 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04422 Seca-Chr2 129546329 129554863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04422 1 459 G2-like Transcription Factor Family AT4G28610 47.009 5.97e-114 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca2g04422 Myb_DNA-binding 9.2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04422 - - gmx:100810560 780.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca2g04422 2 129546329 129554863 Seca2g04422 2 129546329 129554863 ECH
Seca2g04422 2 129546329 129554863 Seca2g04422 2 129546329 129554863 PCT
Seca8g06241 8 156495997 156499113 Seca2g04422 2 129546329 129554863 PCT