Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04420 ATGGAAGACTTGGATTACCACGATGGCGGGTTTGAGGACATAGGCATCTCTCAACCCCCACAAACCCAACCAGCCACCATTCACCAGTCTGACACTCGAGATGAAATCATACGCCGACTTGAAGCTCGACTGAAAGAGCTAGAAGAACAAAGTCTGAAACACCACCGCATCTCAACCTCCACCATCTCCGAACCAGATTTGGATTATGCCAACCTTAGCAACACAAGGAGATATCTGAGAAATGTGTACGCATCACCAAGAACAGAAGCAGAAGCCCTTGTCAAATGGAAAAACAGTCTATCCCCTCCTCTTCCTGCTTATTTAAACTCATGGTCACTTACCAACCTTGGCAACCTTTGCAGCTGGAATGCTGTTGTCTGTGACAACACTAATACAACAGTCTCAGAGATAAACTTCTCTGGTGCCAATCTCACTGGGACACTCACTGGCTTGGACTTTGCTTCCCTCCCCAACCTCACCAGCCTCAACCTCAATGGAAACAATTTTGGTGGGTCAATACCATCAGCAATTGGCAACCTCTCTAAGCTCACTTTCTTGGACTTGGGACACAACTTATTTAAGGACACACTGCCTTCTGAGCTAGGCCAGCTAAGGGAACTTCAATATCTAAGTTTTTACTTCAACAATCTCAATGGTACCATTCCCTATCAGCTCACCAATCTCCCCAACGTACAGTACCTGAATTTTGGATCAAACTACTTTATATCTCCTCCGGACTGGTCCCAATATTCAGGCATGCCTTACTTAACATATCTTGATTTGGATGAAAATGAATTCACTGCTGAGTTCCCAAGTTTCGTACTGGGGTGCCAGAATTTGACATTCCTTGACATCTCTCAGAATCATTTTAATGGCACAATACCAGAATCTATGTATAATTTAGTCAAGCTTGAATACCTCAACCTTACCAACTGTGGACTAGAAGGAAAACTGTCATCCAACTTGTCCAGGCTCTCTAATCTCAAAGAACTTCGTATAGGCAATAACATGTTTACTGGTCCTATTCCTACAGAGATAGGATTGATATCAGGGCTTCAACTTCTTGAATTGAACAATGTTTCAGCACATGGGGAAATTCCTTCTTCCTTAGGTCAACTCAGGGAGCTAAGGAATCTTGATCTCCGTGCCAATTTTTTGAACTCTACAGTCCCTTCTGAGCTTGGCCTATGCACAAATCTCACCTTTCTGAGTTTAGCAGGTAATAATCTGACTGGTCTCTTACCTTTGTCATTAGCTAATCTGATCAAATTATCAGAGTTGGGATTATCAGAAAATTCCTTTTCTGGTCAAATTTCTGCTTCATTGATCTCTAATTGGAGAGAGTTGACATCTCTGCAAGTCCAAAACAACCAATTAACGGGAAAGGTTCCTCCACAGATTGGCCTATTGAAAAAAATTAGATTCCTCTTTCTATACAAAAATAAGTTTTCTGGTCCCATTCCTGAAGAGATTGGAAACCTGAAGGAAATGACAGAGTTAGACCTTTCAGGAAACCACTTCTCTGGTCCAATTCCACCAACCATTTGGAATCTAACAAACATTTTGGTCATAAATCTTTTCTTCAACAAGCTCTCTGGAACCATTCCCATGGATATTGGAAACTTAACTTCACTGCAAATTTTTGATGTCAACAATAATAATTTGGATGGAGAGTTGCCAGAGACCATTGCTCAACTAACTGCTTTAACTTATTTTTCTGTGTTCACCAATAATTTCTCTGGCAGCATTCCCAGAGATTTTGGAAAGAATAGTCCTTCATTGACTCATGTCTACCTTTCAAACAACAGCTTCTCAGGAGAACTGCCTTCTGACATGTGCAGTGGTATCAAGCTACTTGTTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCATTTCCATCCCTCAGAAATTGTTCATCTCTAACTAGAGTTCGGCTTGATGACAACCGCTTCACTGGAAACATCACAGAAGCCTTTGGGGTTCATCCAAATCTTGTTTTTATCTCAGCTAGTGGCAATGAGCTTGTTGGGGAGCTCTCCCCTGAGTGGGGTGAATGTGTCAACTTAACTGAGATAGAAATGAGTAGAAACAAACTCTCTGGAAGAATTCCATCTGAGTTGAGTAAGTTGAGTCGATTACAATATCTAAGCTTGCACTCCAATGAACTCAGTGGCACTATCCCACCAGAAATTGGAAATCTAAGCCTGCTCTTCATGTTCAACTTGAGTAGGAACCATTTGTCAGGAGAAATCCCAGAGAGTATTGGAAGATTAGCTCAGCTTAAAATTCTTGATTTATCAGAAAACAACTTCAGTGGAAGCATTCCTAAAGAGCTTAGTAACTGTAAACGCTTACTGAGTCTGGATTTAAGCCATAACAATCTATCTGGGGAAATACCATATGAACTTGGCAAACTGTTCTCACTCCAATACTTATTGGACCTCAGCAGCAACTCTCTTTCAGGGGAAATTCCTCAAAACCTTCAAAAATTAGCATCATTGGAGATTCTCAATGTCTCACACAACCATCTGTCAGGGACAATCCCACAATCCTTCTCAAGTATGATCAGCCTTCTATCTATCGATTTTTCTTACAACCAATTGACAGGTTTAATCCCAACAGGAGTTGTTTTCCAGACAGTAACTGCCGAAGCATATGTTGGGAACTCAGGTTTATGTGGTGAGGTAAAAGGATTAACCTGTGCCAAATTATTGTCTCCAGACAACAATGGTGGGGTTAACAAAAAGGTTCTTCTTGGTGTTATTACACCAGTTTGTGGGCTACTTTTAATTGGGATGATTGGTGTTGGAATCATACTATTCCGAAGGCACGCCAAAGTACACCTTGATGAAGAGTCCAAAAGCATTGAAAATGATATTCAGTTTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACAAATGACTTCAATGACAAGTACTGCATTGGAAAAGGAGGATTTGGGAGTGTTTATAGAGCAGAATTACCTACAGGTCAAGTAATTTCTGTTAAAAGGCTCAACATATCAGATTCTGATGACATTCTAGCAGTGAACCGCCAGAGTTTTATGAATGAGATAAAAACATTGACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGTTTCTGTTCTAGAAGGAGACAAATGTTCTTGGTTTATGAATATGTAAACAGAGGAAGTTTAGGAAAGGTGCTGTATGGAGAAGAAGGAAAATTGGAGCTAAGCTGGGCTACAAGGGTGAAAATTGTGCAGGGAATAGCACATGCAATTTCCTACCTGCACAGTGATTGCTCCCCACCAATTATGCATAGAGATGTAACACTGAATAACATACTACTGGACTCAGACTTTGAACCACATCTTGCAGATTTTGGCACAGCAAAGCTGCTAAGCTCCAACACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTACATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTCATAAGTGTGACGTCTATAGTTTTGGAGTGGTGGCATTAGAGATAATGATGGGAAACCACCCTGGAGAACTGTTGGTTATACTGTCTTCAAACAAGTGTTTGTCATCAATAGAGGATTCACAGGTTCTTCTGAAGGATGTGCTAGACCAAAGGCTTCCACCTCCAACAGGCCATTTAGCTGAAGCAATAGTTTTCACAATGAGTGTAGCTTTGGCATGCACGCGTGCAGCTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAAGAACTATCAGCTACTACACAGGCTTGTCTTTCCGAGCCATTTGGAATGATAACCATAAGCAAGCTTACCGGGTTCCAGAAATAG 3855 0.4148 MEDLDYHDGGFEDIGISQPPQTQPATIHQSDTRDEIIRRLEARLKELEEQSLKHHRISTSTISEPDLDYANLSNTRRYLRNVYASPRTEAEALVKWKNSLSPPLPAYLNSWSLTNLGNLCSWNAVVCDNTNTTVSEINFSGANLTGTLTGLDFASLPNLTSLNLNGNNFGGSIPSAIGNLSKLTFLDLGHNLFKDTLPSELGQLRELQYLSFYFNNLNGTIPYQLTNLPNVQYLNFGSNYFISPPDWSQYSGMPYLTYLDLDENEFTAEFPSFVLGCQNLTFLDISQNHFNGTIPESMYNLVKLEYLNLTNCGLEGKLSSNLSRLSNLKELRIGNNMFTGPIPTEIGLISGLQLLELNNVSAHGEIPSSLGQLRELRNLDLRANFLNSTVPSELGLCTNLTFLSLAGNNLTGLLPLSLANLIKLSELGLSENSFSGQISASLISNWRELTSLQVQNNQLTGKVPPQIGLLKKIRFLFLYKNKFSGPIPEEIGNLKEMTELDLSGNHFSGPIPPTIWNLTNILVINLFFNKLSGTIPMDIGNLTSLQIFDVNNNNLDGELPETIAQLTALTYFSVFTNNFSGSIPRDFGKNSPSLTHVYLSNNSFSGELPSDMCSGIKLLVLAVNNNSFSGPFPSLRNCSSLTRVRLDDNRFTGNITEAFGVHPNLVFISASGNELVGELSPEWGECVNLTEIEMSRNKLSGRIPSELSKLSRLQYLSLHSNELSGTIPPEIGNLSLLFMFNLSRNHLSGEIPESIGRLAQLKILDLSENNFSGSIPKELSNCKRLLSLDLSHNNLSGEIPYELGKLFSLQYLLDLSSNSLSGEIPQNLQKLASLEILNVSHNHLSGTIPQSFSSMISLLSIDFSYNQLTGLIPTGVVFQTVTAEAYVGNSGLCGEVKGLTCAKLLSPDNNGGVNKKVLLGVITPVCGLLLIGMIGVGIILFRRHAKVHLDEESKSIENDIQFICMVWGRDGKFTFSDLVKATNDFNDKYCIGKGGFGSVYRAELPTGQVISVKRLNISDSDDILAVNRQSFMNEIKTLTGVRHRNIIKLYGFCSRRRQMFLVYEYVNRGSLGKVLYGEEGKLELSWATRVKIVQGIAHAISYLHSDCSPPIMHRDVTLNNILLDSDFEPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTHKCDVYSFGVVALEIMMGNHPGELLVILSSNKCLSSIEDSQVLLKDVLDQRLPPPTGHLAEAIVFTMSVALACTRAAPESRPMMRSVAQELSATTQACLSEPFGMITISKLTGFQK. 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04420 1284 ProSiteProfiles Leucine-rich repeat profile. 399 420 IPR001611 GO:0005515
Seca2g04420 1284 SUPERFAMILY RNI-like 136 460 - -
Seca2g04420 1284 Pfam Leucine Rich Repeat 833 854 IPR001611 GO:0005515
Seca2g04420 1284 PANTHER LEUCINE RICH REPEAT KINASE 2 554 1265 - -
Seca2g04420 1284 Coils Coil 30 57 - -
Seca2g04420 1284 FunFam MDIS1-interacting receptor like kinase 2 425 590 - -
Seca2g04420 1284 Pfam Leucine Rich repeat 156 172 IPR001611 GO:0005515
Seca2g04420 1284 SUPERFAMILY Protein kinase-like (PK-like) 968 1259 IPR011009 -
Seca2g04420 1284 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 591 904 - -
Seca2g04420 1284 SUPERFAMILY RNI-like 559 870 - -
Seca2g04420 1284 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1111 1123 IPR008266 GO:0004672|GO:0006468
Seca2g04420 1284 FunFam MDIS1-interacting receptor like kinase 2 1066 1265 - -
Seca2g04420 1284 FunFam MDIS1-interacting receptor like kinase 2 86 247 - -
Seca2g04420 1284 PRINTS Leucine-rich repeat signature 785 798 - -
Seca2g04420 1284 PRINTS Leucine-rich repeat signature 831 844 - -
Seca2g04420 1284 Gene3D Ribonuclease Inhibitor 345 443 IPR032675 -
Seca2g04420 1284 Gene3D Phosphorylase Kinase; domain 1 946 1065 - -
Seca2g04420 1284 Pfam Protein kinase domain 987 1191 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04420 1284 SUPERFAMILY L domain-like 440 588 - -
Seca2g04420 1284 CDD STKc_IRAK 991 1259 - -
Seca2g04420 1284 Gene3D Ribonuclease Inhibitor 565 902 IPR032675 -
Seca2g04420 1284 MobiDBLite consensus disorder prediction 16 30 - -
Seca2g04420 1284 Gene3D Ribonuclease Inhibitor 248 344 IPR032675 -
Seca2g04420 1284 Gene3D Ribonuclease Inhibitor 86 247 IPR032675 -
Seca2g04420 1284 Pfam Leucine rich repeat N-terminal domain 88 128 IPR013210 -
Seca2g04420 1284 Gene3D Transferase(Phosphotransferase) domain 1 1066 1269 - -
Seca2g04420 1284 MobiDBLite consensus disorder prediction 1 32 - -
Seca2g04420 1284 Pfam Leucine rich repeat 254 314 IPR001611 GO:0005515
Seca2g04420 1284 Pfam Leucine rich repeat 741 795 IPR001611 GO:0005515
Seca2g04420 1284 FunFam Leucine-rich repeat receptor protein kinase MSP1 948 1065 - -
Seca2g04420 1284 ProSiteProfiles Protein kinase domain profile. 985 1272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04420 1284 SMART LRR_typ_2 301 325 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 373 397 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 592 615 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 758 782 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 542 566 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 831 854 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 156 179 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 398 420 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 180 204 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 710 734 IPR003591 -
Seca2g04420 1284 SMART LRR_typ_2 494 518 IPR003591 -
Seca2g04420 1284 FunFam Leucine Rich Repeat family protein, expressed 248 342 - -
Seca2g04420 1284 Gene3D Ribonuclease Inhibitor 444 562 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04420 Seca-Chr2 129513526 129523738 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04420 89 704 Receptor kinase-like Gene Family AT4G08850 30.265 2.70e-73 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g04420 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04420 - - gmx:100809137 1888.62