Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04419 ATGACAACTTTTCAAAAGGCTCATGTTCTTCTTTTTCATATACTAGTGATATCTTTGCTTCCATTGAAAATCACAGCATCACCAAGAACAGAAGCAGAAGCCCTTGTTAAATGGAAAAACAGTTTATCCCCTCCTCTTCCTCCTCCTTTGAACTCATGGTCACTTGCCAACCTTGGCAACCTTTGCAGCTGGTATGCTGTTGTTTGTGACAACACAAATTCAACAGTCTCAGAGATAAACTTCTCTGGTGCCAATCTCACTGGGACACTCACTGGCTTGGATTTTGCTTCCCTCCCCAACCTCACTAGCCTCAACTTCAATGGTAATAATTTTGGTGGGTCAATACCATCATCAATTGGCAAACTCTCCAAGCTCACTTTCTTGGACTTGGGACACAACTTATTTGAAGACACACTGCCTTCTGAGCTAGGCCAGCTAAGGGAACTTCAATATCTAAGCTTTTACTTCAACAATCTCAATGGTACCATTCCCTATCAGCTCACCAATCTCCCCAAGGTACAGTACCTGAACTTTGGATCAAACTACTTTATATCTCCTCCTGACTGGTCCCAGTATTCAGGCATGCCTTACTTAACATATCTTGATTTGGATGAAAATGAATTCACTGCTGAGTTCCCAAGTTTCATACTGGGGTGCCAGAATTTGACATTCCTTGACATCTCTCAGAACCATTTTAATGGCACAATACCAGAATCTATGTATAATTTAGTCAAGCTTGAATACCTCAACCTTACCAACTGTGGACTAGAAGGAAGACTGTCATCCAACTTGTCCAGGCTCTCTAATCTCAAAGAACTTCGTATAGGCAATAACATGTTTACTGGTCCTATTCCTACAGAGATAGGATTGATATCAGGGCTTCAACTTCTTGAATTGAACAATATTTCAGCACGTGGGGAAATTCCTTCTTCCATTGGTCAACTCAGGGAGCTAAGGAATCTTGATCTCCGTGCTAATTTTTTGAACTCTACAATCCCTTCTGAGCTTGGCCTATGCACAAATCTCACCTTTCTGAGTTTAGCAGGTAATAATCTGACTGGTCTCTTACCTTTGTCATTAGCTAATCTTACCAATCTATCAGAGTTGGGATTATCAGAAAATTCCTTTTCTGGTCAAATTTCTGCTTCATTGATCTCTAATTGGAGAGAGTTGACATCTCTGCAAGTCCAAAACAACCAATTAACGGGAAAGGTTCCTCCACAGATTGGCCTATTGAAAAAAATCAATTTCCTCTTCATGTACAATAATCTGTTTTCTGGCCCCATTCCTGAAGAGATTGGAAACCTGAAGGAAATGACAGAGTTAGACCTTTCAGGAAACCACTTCTCTGGTCCAATTCCACCAACCATTTGGAATCTAACAAACATCTTGGTCATAAATCTTTTCTTCAACAAGCTCTCTGGAACCATTCCCATGGATATTGGAAACTTAACATCACTGCAAATTTTTGATGTCAACAATAATAATTTGGATGGAGAGTTGCCAGAGACCATTGCTCAACTAACTGCTTTAACTTATTTTTCTGTGTTCACCAATAATTTCTCGGGCAGCATTCCCAGAGATTTTGGAAAGAGTAGTCCTTCTTTGAAGCGTATCTACCTTTCAAACAACAGCTTCTCAGGAGAAATGCCTTCTGACTTGTGTAGTGGTTTCAACCTAGATGTTTTGGCAGTCAATAACAACAGCTTTTCAGGGCCATTGCCATCCCTGAGAAATTGCTCATCGCTAGTTAGAGTTCGGCTTGATGAAAACCAGTTCACTGGAAACATCACAGAAGCATTTGGGGTTCATCCAGATCTTAATTTCATCTCACTCAGTGGAAATGAGCTTGTTGGTGAGCTCTCTCCTGAGTGGGGTGAATGTGTCAACTTAACTGAGATTGAAATGAGTAGAAACAACCTTTCTGGAAGAATTCCATCAGAGTTGAGTAAGTTGAATCGATTACAATATCTAAGCTTGCACTCCAATGAATTTACTGGCACTATCCCACCTGAAATTGGAAATCTAAGCCTGCTCTACATGTTCAACTTGAGCAAGAACCATTTGTCAGGAGAAATCCCAGAGAGCATTGGCAGATTGGCTCAGCTTGATTATCTTGATTTATCAGATAACAACTTCAGCGGAAGCATTCCTAGAGAGCTCAGTAATTGTGATCGCTTACTGAGTCTGAATTTAAGCCATAATAACCTATCTGGAGAAATACCATATGAACTTGGCAATCTGTTTTCACTCCAATACTTGTTGGACCTCAGCAGCAACTCTCTATCAGGGGCAATTCCTCAAAACCTTCAAAAGCTAGCATCATTAGAGATTCTCAATGTCTCACACAACCACCTGTCAGGGACAATCCCACAATCCTTTTCAAGTATGATCAGCCTTCAATCTATTGATTTTTCTTACAACCACTTGACGGGTTTAATCCCAACAGGAGGTGTTTTCCAGACAGCAACTGCCGAAGCTTATGTTAGGAACTCAGGTTTGTGTGGTAAAGTGAAAGGATTAGCTTGTGCCAATGTATTGTCCCCAGATAATTCTGGAGGGGCCAAAAAAAAGGTTCTTCTTGGTGTTATTATACCAGTTTGTGGGCTACTATTAATAGGGATGATTGGTGTTGGAATCATACTATTCCGCAGGCATGACAAACACCTTGATCAAGAGTCCAAAAACATTGAAAATGATGGTCAGTCTATTTGCATGGTATGGGGAAGAGATGGAAAATTCACATTTTCTGATCTTGTTAAGGCCACCAATGACTTCAATGACAAGTGCTTCATTGGAAAGGGAGGATTTGGAACGGTTTATAGAGCAGAATTACCTACAGGTCAAGTAGTTGCTGTTAAAAGGCTCAACATATCAGACTCAGATGACATTCCAGCAGTGAACCGCCAGAGTTTTATGAATGAAATAAGAACACTTACTGGAGTGAGGCACCGCAATATAATAAAGCTTTACGGGTTCTGTTCTAGGAGGAAACAAATGTTCTTGGTTTATGAATATGTAGACAGAGGAAGTTTGGGAAAAGTGCTGTATGGAGAAGAAGGAAATTTGGAGCTAAGTTGGGCTACAAGGATGAAAATTGTGCAGGGAATAGCACATGCAATTTCTTACTTGCATAGTGATTGCTCCCCACCAGTTGTGCATCGAGATGTAACACTGAATAACATACTACTGGACTCAGACTTTGAACCCCATCTTGCAGATTTTGGCACAGCAAAGCTTCTAAGCTCCAATACTTCAACCTGGACATCAGTTGCTGGATCCTATGGCTATATGGCTCCAGAGCTAGCACAAACTATGAGGGTCACTGATAAGTGTGATGTCTATAGTTTTGGAGTGGTGGTATTAGAGATAATGATGGGAAAGCACCCTGGAGAATTCTTGGCTACCTTGTATTCAAACATGTCTTTGTCATCAATAGAGGATTCACAGGTTCTTCTGAAGGATGTGCTAGACCAAAGGCTTCCACCTCCAACAGGGCAATTAGCTGAAGCAATAGTGTTCACAATGAGTGTAGCTTTGGCATGCACGCGTGCAGCTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAAGAATTGTCTGCTACTACGCAGGCTTGTCTTTCAGAGCCATTTGGAATGATAACCATAAGCAAGCTTACAGGATTTCAGAAATAG 3678 0.4108 MTTFQKAHVLLFHILVISLLPLKITASPRTEAEALVKWKNSLSPPLPPPLNSWSLANLGNLCSWYAVVCDNTNSTVSEINFSGANLTGTLTGLDFASLPNLTSLNFNGNNFGGSIPSSIGKLSKLTFLDLGHNLFEDTLPSELGQLRELQYLSFYFNNLNGTIPYQLTNLPKVQYLNFGSNYFISPPDWSQYSGMPYLTYLDLDENEFTAEFPSFILGCQNLTFLDISQNHFNGTIPESMYNLVKLEYLNLTNCGLEGRLSSNLSRLSNLKELRIGNNMFTGPIPTEIGLISGLQLLELNNISARGEIPSSIGQLRELRNLDLRANFLNSTIPSELGLCTNLTFLSLAGNNLTGLLPLSLANLTNLSELGLSENSFSGQISASLISNWRELTSLQVQNNQLTGKVPPQIGLLKKINFLFMYNNLFSGPIPEEIGNLKEMTELDLSGNHFSGPIPPTIWNLTNILVINLFFNKLSGTIPMDIGNLTSLQIFDVNNNNLDGELPETIAQLTALTYFSVFTNNFSGSIPRDFGKSSPSLKRIYLSNNSFSGEMPSDLCSGFNLDVLAVNNNSFSGPLPSLRNCSSLVRVRLDENQFTGNITEAFGVHPDLNFISLSGNELVGELSPEWGECVNLTEIEMSRNNLSGRIPSELSKLNRLQYLSLHSNEFTGTIPPEIGNLSLLYMFNLSKNHLSGEIPESIGRLAQLDYLDLSDNNFSGSIPRELSNCDRLLSLNLSHNNLSGEIPYELGNLFSLQYLLDLSSNSLSGAIPQNLQKLASLEILNVSHNHLSGTIPQSFSSMISLQSIDFSYNHLTGLIPTGGVFQTATAEAYVRNSGLCGKVKGLACANVLSPDNSGGAKKKVLLGVIIPVCGLLLIGMIGVGIILFRRHDKHLDQESKNIENDGQSICMVWGRDGKFTFSDLVKATNDFNDKCFIGKGGFGTVYRAELPTGQVVAVKRLNISDSDDIPAVNRQSFMNEIRTLTGVRHRNIIKLYGFCSRRKQMFLVYEYVDRGSLGKVLYGEEGNLELSWATRMKIVQGIAHAISYLHSDCSPPVVHRDVTLNNILLDSDFEPHLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEIMMGKHPGEFLATLYSNMSLSSIEDSQVLLKDVLDQRLPPPTGQLAEAIVFTMSVALACTRAAPESRPMMRSVAQELSATTQACLSEPFGMITISKLTGFQK. 1226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04419 1225 Pfam Protein kinase domain 929 1132 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04419 1225 Gene3D Ribonuclease Inhibitor 28 187 IPR032675 -
Seca2g04419 1225 Gene3D Ribonuclease Inhibitor 188 287 IPR032675 -
Seca2g04419 1225 Gene3D Ribonuclease Inhibitor 386 504 IPR032675 -
Seca2g04419 1225 Gene3D Ribonuclease Inhibitor 288 385 IPR032675 -
Seca2g04419 1225 CDD STKc_IRAK 932 1200 - -
Seca2g04419 1225 FunFam Leucine Rich Repeat family protein, expressed 190 284 - -
Seca2g04419 1225 FunFam Leucine-rich repeat receptor protein kinase MSP1 888 1006 - -
Seca2g04419 1225 Gene3D Ribonuclease Inhibitor 505 844 IPR032675 -
Seca2g04419 1225 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 533 846 - -
Seca2g04419 1225 Pfam Leucine rich repeat 755 810 IPR001611 GO:0005515
Seca2g04419 1225 Pfam Leucine rich repeat 679 737 IPR001611 GO:0005515
Seca2g04419 1225 Pfam Leucine rich repeat 196 256 IPR001611 GO:0005515
Seca2g04419 1225 SUPERFAMILY Protein kinase-like (PK-like) 908 1200 IPR011009 -
Seca2g04419 1225 FunFam MDIS1-interacting receptor like kinase 2 28 189 - -
Seca2g04419 1225 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 507 1202 - -
Seca2g04419 1225 SUPERFAMILY Outer arm dynein light chain 1 382 526 - -
Seca2g04419 1225 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1052 1064 IPR008266 GO:0004672|GO:0006468
Seca2g04419 1225 Gene3D Phosphorylase Kinase; domain 1 887 1006 - -
Seca2g04419 1225 ProSiteProfiles Protein kinase domain profile. 926 1213 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04419 1225 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Seca2g04419 1225 SMART LRR_typ_2 484 508 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 652 676 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 700 724 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 534 557 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 773 796 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 195 219 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 315 339 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 436 460 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 797 822 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 98 121 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 243 267 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 340 362 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 122 146 IPR003591 -
Seca2g04419 1225 SMART LRR_typ_2 363 387 IPR003591 -
Seca2g04419 1225 FunFam MDIS1-interacting receptor like kinase 2 364 532 - -
Seca2g04419 1225 ProSiteProfiles Leucine-rich repeat profile. 341 362 IPR001611 GO:0005515
Seca2g04419 1225 ProSitePatterns Protein kinases ATP-binding region signature. 932 954 IPR017441 GO:0005524
Seca2g04419 1225 FunFam MDIS1-interacting receptor like kinase 2 1007 1206 - -
Seca2g04419 1225 SUPERFAMILY RNI-like 501 812 - -
Seca2g04419 1225 Gene3D Transferase(Phosphotransferase) domain 1 1007 1210 - -
Seca2g04419 1225 SUPERFAMILY RNI-like 78 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04419 Seca-Chr2 129507060 129511086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04419 31 646 Receptor kinase-like Gene Family AT4G08850 30.733 7.50e-76 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g04419 Pkinase 1.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04419 - - gmx:100809137 1887.85