Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca2g04418 ATGAAAATAACTCTTCAGATGACAATTTTCTCTCTGGTTTTGTCTTGTATACTTGCAGAGATTTCAGCACAGAAAGAAGCAGAGTCTCTGATTACCTGGATGAACAGTTTGAACTCTCCCTTGCCACCTTCATGGAATCTCAAGAACAACAACAGCAGTCCATGCAATTGGAGTGGCATTAAGTGTGATAAAGCAGGCAGTGTTGTTGAGATAAATCTTCCCAACTCAGGCCTAGATGGAACACTTAACAGGTTTGACTTTTCTGCCTTTCCTAATCTCAATAACTTCAATGCCAATATGAATAACCTAGTTGGAGAGATACCTGCTGGAATTGGAAATGCAACAAAGTTGAAAATACTTGATTTGAGTAGCAACAATTTGACCAATCCAATCCCCCCAGAAATTGGAAAATTGCTAGAGCTACAAGTTCTGCTTCTCTCAAACAATTCACTCTTAAAACAAATACCAACTCAACTTAGCAATTTGCAGAATTTACAGCTTCTTGACCTAGGGGGGAATTATTTAGAGAATCCTGACCCAGTTCAATTTAAGGGCATGACATCCATAACAGACCTTAATCTCACCTATAACTATCTCACAGAGGTTCCCCCATTTGTTTCTAAATGTCCAAATTTGGTGTCTCTTGATTTATCACTCAACACTATCACTGGGCAGCTTCCAATTCATTTACTGACCAGTCTTAAGAACTTGACAATTCTATTCCTTACAACAAACAGTTTAGAGGGGTCAATTCCAGTAGAGTTTAAGAACCTTACAAACCTCAAACAGTTAAAGCTTGGACAAAACAACCTGAATGGTACTATACCTGAGGAGATTGGTCTCTTGTCATACCTTGAGGTGCTTGAATTGCATCAAAATAACTTCCAAGGTCCAATACCATCATCAATTGGAAATCTTCATATGCTTCAGAGATTGGATCTCCACTTGTCAGGCCTAAATTCCAGCATCCCAGCTGAGATAGGCTTCTGCACCAACCTTACTTTTGTTGATATGTCAGGAAATAGCCTGACAGGTCCCTTGCCTCTTTCCATGGCTTCATTAACAAGTATCAGAGAGTTGGGAATATCTGTTAACCATTTATCAGGAGAACTTCATCCATCTCTTCTTTCTAGTTGGCCAGAACTCTTTTCATTGCAACTCCAGCTGAATGACATGTCAGGAAGACTTCCTCCTGAGATTGGTAAACTGCATAATCTAACTCTCCTATACCTATATCAAAACCAGTTTTCTGGACCAATACCTCCAGAAATTGGAAACTTATCAAGCATCATTGAACTTGCACTGTCCAACAACTATTTCAATGGTTCCATCCCATCAACCATTGGACAGTTACACAAGCTCAGCTCATTAAAACTCTCCTCAAACCAACTAATTGGAGCCCTTCCTCCTGAAATAGGTGATTTGGAAAGCTTACAAGAGCTGGACTTAAGTGAGAACAAGCTTGCAGGACCTTTTCCCCCATCAATAACTCGTTTGAAAAACATCAATCTCCTTTATCTTCATTCCAACAATTTCTCAGGAAGTATTCCTGAAGATTTTGGGCCAAACTTTTTACGTAATGTGAGCTTTGCCAACAATAGTTTTTCTGGAAGGCTCCCTTCAGGAATATGCAGGGGAGGGAATCTTATCTACTTGGCAGCCAATTTGAATAATTTCTTTGGTCCAATTCCTGAAAGTCTGAGAAACTGCACTGGACTAAATAGAGTCCTACTTGGAAACAATAATCTAAGTGGAAATATTACCAATGCATTTGGTATATATCCAGATCTGGACTTCATTGATTTAGGACATAATCAGCTCTCTGGATTGTTATCAAGTAACTGGGGAGAGTGCAAAAAGCTATCAAGTTTTAGCATATCTACCAATAAAGTACAGGGGACTATTCCTCCGGAGCTTGGAAAATTGCCAAGGCTGCAAAATCTTGACCTATCTGAAAACAGTCTCACAGGAAATATTCCAGTAGAGTTATTTCACTCATCTTCCTTGCTCCTCAAACTAAACTTTAGCAACAATGATCTCTCAGGTAAGATACCAGCTGAGATAGGACTACTTTCACAGCTGCAGTATCTGGATTTATCAGCAAACAATCTGAGTGGGCCAATTCCAAAGGAACTAGGAAGCTGTTGGAAACTTATATTCTTGAAACTGAGTATGAACAAGTTAGATGGGCAAATGCCATATGAGCTTGGGAATCTGGTTAACTTGCAGCCTCTCTTAGATCTCAGCCATAACTCACTAAGTGGACAGATAATCACACAGCTTGAAAATTTAATATCCTTGGAGGTTTTGAATCTTTCTCATAACCAGCTTTCTGGGGCAATACCTTCAGGTCTCAAAGGACTTATCAGCCTTCAGTCAGTGGATATATCCTACAACAAACTTGAAGGTCCCCTCCCAGAGCTAGAAGCTTTTCATAAAGCTCCAGCAGAAGCACTTGTAGGTAATGCTGGTCTGTGTGCTAATGCTGATGGCAATGCAAATCTGAGGCCATGTGGTGGAGAAAAAAGCAAGAAAGCTAATAAACATAAGCTGATAATTGCTATAGTCATTCCAATTGTTGCTTTAACCATTCTATTGATTTGCCTTGGAATCTTCATCTTCCGGCGTTATCAAAGAGTTCATGAAGATGAGGAGGACAAGAGTCCAGATGAAAAGAACTCGTTCTTCATATGGAATTATAGGAATACAATAGAGTTTGAGGATATACGATCTTCAACTGAGAATTTCAGTGACAAGTATTGCATAGGGAAAGGAGGACAAGGCAGTGTCTACAAGGCAGTGCTTCCAACAGGTGACATCTTTGCAGTAAAACGTCTTCACCAACATGAGGAAATGGACTTCTCTGGATATCAGACCAAGAATTTCACTTCTGAAATCCTTGCATTGACTAATACTCGTCATAGGAATATTGTGAAAATGTGTGGGTTCAGATACTCAGCTGATGGGTCAATGTTTTTCATAAATGAGTATGTGGAAAGAGGCTCTTTAGAAAGGGTGTTACAGAAGGAAGTGGAGGCAAAAATCTTGACATGGGACATCAGGTTAAACATGATAAAAGGGTTGGCAAATGCATTGTCTTACCTGCACCATGACTGCACACCTAGCATTGTTCACAGAGACATTTCAGGAAACAATATTCTGTTAGACTCTGAGTATGAGCCTAAGATCACTGACTTTGGAACAGCAAGATTGTTAAAAGATGGAGAATCAAACTGGACAGCTCCAGCTGGATCATATGGCTACATAGCACCAGAGCTTGCATTGACAATGAAGGTGACAGAAAAATGTGATGTGTACAGTTTTGGAATTGTTGCATTACAAATTCTGGTGGGGAGGTATCCTCATGAGATCCTTTCATGTTTAGAGTCTGGGGAATGTGATCAACACTTTGTTGATTTCTTAGATAAGAGAGTAGCTCCTCCAGAAGGTCCTATAGTCCAACTCCTGATAGTGGTTGCAAGCTTGATCCTAAAGTGTATTGATAAAGATCCTTTGTCACGACCCACCATGCGTCAAGTGTCCCAAGAACTTTTATCAACTACTTGGTGGTCACTCTCTGTCCCTTTTAACATGATCACTCTGCAGAATTTACTTCATATGTAG 3624 0.399 MKITLQMTIFSLVLSCILAEISAQKEAESLITWMNSLNSPLPPSWNLKNNNSSPCNWSGIKCDKAGSVVEINLPNSGLDGTLNRFDFSAFPNLNNFNANMNNLVGEIPAGIGNATKLKILDLSSNNLTNPIPPEIGKLLELQVLLLSNNSLLKQIPTQLSNLQNLQLLDLGGNYLENPDPVQFKGMTSITDLNLTYNYLTEVPPFVSKCPNLVSLDLSLNTITGQLPIHLLTSLKNLTILFLTTNSLEGSIPVEFKNLTNLKQLKLGQNNLNGTIPEEIGLLSYLEVLELHQNNFQGPIPSSIGNLHMLQRLDLHLSGLNSSIPAEIGFCTNLTFVDMSGNSLTGPLPLSMASLTSIRELGISVNHLSGELHPSLLSSWPELFSLQLQLNDMSGRLPPEIGKLHNLTLLYLYQNQFSGPIPPEIGNLSSIIELALSNNYFNGSIPSTIGQLHKLSSLKLSSNQLIGALPPEIGDLESLQELDLSENKLAGPFPPSITRLKNINLLYLHSNNFSGSIPEDFGPNFLRNVSFANNSFSGRLPSGICRGGNLIYLAANLNNFFGPIPESLRNCTGLNRVLLGNNNLSGNITNAFGIYPDLDFIDLGHNQLSGLLSSNWGECKKLSSFSISTNKVQGTIPPELGKLPRLQNLDLSENSLTGNIPVELFHSSSLLLKLNFSNNDLSGKIPAEIGLLSQLQYLDLSANNLSGPIPKELGSCWKLIFLKLSMNKLDGQMPYELGNLVNLQPLLDLSHNSLSGQIITQLENLISLEVLNLSHNQLSGAIPSGLKGLISLQSVDISYNKLEGPLPELEAFHKAPAEALVGNAGLCANADGNANLRPCGGEKSKKANKHKLIIAIVIPIVALTILLICLGIFIFRRYQRVHEDEEDKSPDEKNSFFIWNYRNTIEFEDIRSSTENFSDKYCIGKGGQGSVYKAVLPTGDIFAVKRLHQHEEMDFSGYQTKNFTSEILALTNTRHRNIVKMCGFRYSADGSMFFINEYVERGSLERVLQKEVEAKILTWDIRLNMIKGLANALSYLHHDCTPSIVHRDISGNNILLDSEYEPKITDFGTARLLKDGESNWTAPAGSYGYIAPELALTMKVTEKCDVYSFGIVALQILVGRYPHEILSCLESGECDQHFVDFLDKRVAPPEGPIVQLLIVVASLILKCIDKDPLSRPTMRQVSQELLSTTWWSLSVPFNMITLQNLLHM. 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca2g04418 1207 FunFam Leucine-rich repeat receptor protein kinase MSP1 879 997 - -
Seca2g04418 1207 Gene3D Ribonuclease Inhibitor 378 450 IPR032675 -
Seca2g04418 1207 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 28 200 - -
Seca2g04418 1207 Pfam Leucine Rich repeat 115 129 IPR001611 GO:0005515
Seca2g04418 1207 Pfam Leucine Rich repeat 208 224 IPR001611 GO:0005515
Seca2g04418 1207 PRINTS Leucine-rich repeat signature 764 777 - -
Seca2g04418 1207 PRINTS Leucine-rich repeat signature 645 658 - -
Seca2g04418 1207 ProSiteProfiles Protein kinase domain profile. 916 1185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04418 1207 SUPERFAMILY L domain-like 42 369 - -
Seca2g04418 1207 Gene3D Transferase(Phosphotransferase) domain 1 998 1190 - -
Seca2g04418 1207 Pfam Leucine rich repeat 643 704 IPR001611 GO:0005515
Seca2g04418 1207 Pfam Leucine rich repeat 140 199 IPR001611 GO:0005515
Seca2g04418 1207 Pfam Protein kinase domain 919 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca2g04418 1207 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 228 323 - -
Seca2g04418 1207 Gene3D Ribonuclease Inhibitor 276 377 IPR032675 -
Seca2g04418 1207 Gene3D Ribonuclease Inhibitor 181 275 IPR032675 -
Seca2g04418 1207 Gene3D Ribonuclease Inhibitor 22 180 IPR032675 -
Seca2g04418 1207 SUPERFAMILY Protein kinase-like (PK-like) 892 1184 IPR011009 -
Seca2g04418 1207 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Seca2g04418 1207 SUPERFAMILY L domain-like 577 826 - -
Seca2g04418 1207 SMART LRR_typ_2 764 787 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 642 666 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 138 161 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 354 378 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 258 282 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 162 185 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 234 257 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 403 427 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 186 209 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 475 499 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 451 474 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 691 715 IPR003591 -
Seca2g04418 1207 SMART LRR_typ_2 306 330 IPR003591 -
Seca2g04418 1207 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 522 842 - -
Seca2g04418 1207 FunFam Os07g0541700 protein 998 1083 - -
Seca2g04418 1207 Gene3D Ribonuclease Inhibitor 451 524 IPR032675 -
Seca2g04418 1207 SUPERFAMILY L domain-like 354 668 - -
Seca2g04418 1207 FunFam Leucine-rich repeat receptor protein kinase EMS1 324 421 - -
Seca2g04418 1207 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Seca2g04418 1207 Gene3D Ribonuclease Inhibitor 525 834 IPR032675 -
Seca2g04418 1207 FunFam Leucine-rich repeat receptor protein kinase EMS1 422 519 - -
Seca2g04418 1207 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1043 1055 IPR008266 GO:0004672|GO:0006468
Seca2g04418 1207 ProSiteProfiles Leucine-rich repeat profile. 116 138 IPR001611 GO:0005515
Seca2g04418 1207 Gene3D Phosphorylase Kinase; domain 1 878 997 - -
Seca2g04418 1207 SMART LRR_sd22_2 234 255 - -
Seca2g04418 1207 SMART LRR_sd22_2 138 164 - -
Seca2g04418 1207 SMART LRR_sd22_2 475 504 - -
Seca2g04418 1207 SMART LRR_sd22_2 739 766 - -
Seca2g04418 1207 SMART LRR_sd22_2 691 712 - -
Seca2g04418 1207 SMART LRR_sd22_2 258 281 - -
Seca2g04418 1207 SMART LRR_sd22_2 403 429 - -
Seca2g04418 1207 FunFam Nuclear pore complex protein NUP107 23 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca2g04418 Seca-Chr2 129492618 129496633 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca2g04418 183 733 Receptor kinase-like Gene Family AT4G08850 33.574 1.67e-73 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca2g04418 Pkinase 3.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca2g04418 - - ccaj:109803789 1769.98